Strain Fitness in Sinorhizobium meliloti 1021 around SMc02403

Experiment: Myristic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02400 and SMc02401 are separated by 213 nucleotidesSMc02401 and SMc02403 are separated by 179 nucleotidesSMc02403 and SMc02404 are separated by 296 nucleotides SMc02400: SMc02400 - outer membrane protein, at 1,151,919 to 1,152,968 SMc02400 SMc02401: SMc02401 - hypothetical protein, at 1,153,182 to 1,153,658 SMc02401 SMc02403: SMc02403 - murein transglycosylase, at 1,153,838 to 1,155,883 SMc02403 SMc02404: SMc02404 - dihydrodipicolinate synthase, at 1,156,180 to 1,157,064 SMc02404 Position (kb) 1153 1154 1155 1156Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1152.862 kb on + strand, within SMc02400at 1152.862 kb on + strand, within SMc02400at 1152.863 kb on - strand, within SMc02400at 1152.863 kb on - strand, within SMc02400at 1152.863 kb on - strand, within SMc02400at 1152.863 kb on - strand, within SMc02400at 1152.869 kb on + strandat 1152.894 kb on - strandat 1152.929 kb on + strandat 1152.929 kb on + strandat 1152.930 kb on - strandat 1152.962 kb on + strandat 1153.004 kb on - strandat 1153.020 kb on + strandat 1153.020 kb on + strandat 1153.020 kb on + strandat 1153.020 kb on + strandat 1153.020 kb on + strandat 1153.021 kb on - strandat 1153.021 kb on - strandat 1153.021 kb on - strandat 1153.021 kb on - strandat 1153.037 kb on - strandat 1153.168 kb on - strandat 1153.188 kb on - strandat 1153.188 kb on - strandat 1153.188 kb on - strandat 1153.199 kb on - strandat 1153.221 kb on - strandat 1153.222 kb on + strandat 1153.222 kb on + strandat 1153.235 kb on + strand, within SMc02401at 1153.236 kb on - strand, within SMc02401at 1153.236 kb on - strand, within SMc02401at 1153.236 kb on - strand, within SMc02401at 1153.236 kb on - strand, within SMc02401at 1153.236 kb on - strand, within SMc02401at 1153.270 kb on + strand, within SMc02401at 1153.270 kb on + strand, within SMc02401at 1153.321 kb on + strand, within SMc02401at 1153.321 kb on + strand, within SMc02401at 1153.456 kb on + strand, within SMc02401at 1153.456 kb on + strand, within SMc02401at 1153.457 kb on - strand, within SMc02401at 1153.457 kb on - strand, within SMc02401at 1153.457 kb on - strand, within SMc02401at 1153.460 kb on + strand, within SMc02401at 1153.460 kb on + strand, within SMc02401at 1153.460 kb on + strand, within SMc02401at 1153.461 kb on - strand, within SMc02401at 1153.461 kb on - strand, within SMc02401at 1153.461 kb on - strand, within SMc02401at 1153.461 kb on - strand, within SMc02401at 1153.461 kb on - strand, within SMc02401at 1153.461 kb on - strand, within SMc02401at 1153.466 kb on + strand, within SMc02401at 1153.466 kb on + strand, within SMc02401at 1153.903 kb on + strandat 1153.938 kb on + strandat 1153.939 kb on - strandat 1154.056 kb on + strand, within SMc02403at 1154.056 kb on + strand, within SMc02403at 1154.058 kb on + strand, within SMc02403at 1154.058 kb on + strand, within SMc02403at 1154.058 kb on + strand, within SMc02403at 1154.059 kb on - strand, within SMc02403at 1154.079 kb on + strand, within SMc02403at 1154.079 kb on + strand, within SMc02403at 1154.079 kb on + strand, within SMc02403at 1154.079 kb on + strand, within SMc02403at 1154.079 kb on + strand, within SMc02403at 1154.080 kb on - strand, within SMc02403at 1154.080 kb on - strand, within SMc02403at 1154.080 kb on - strand, within SMc02403at 1154.137 kb on + strand, within SMc02403at 1154.137 kb on + strand, within SMc02403at 1154.138 kb on - strand, within SMc02403at 1154.140 kb on - strand, within SMc02403at 1154.173 kb on - strand, within SMc02403at 1154.296 kb on - strand, within SMc02403at 1154.296 kb on - strand, within SMc02403at 1154.608 kb on - strand, within SMc02403at 1154.658 kb on + strand, within SMc02403at 1154.745 kb on + strand, within SMc02403at 1154.844 kb on + strand, within SMc02403at 1154.844 kb on + strand, within SMc02403at 1154.845 kb on - strand, within SMc02403at 1154.962 kb on + strand, within SMc02403at 1154.962 kb on + strand, within SMc02403at 1154.962 kb on + strand, within SMc02403at 1154.962 kb on + strand, within SMc02403at 1155.066 kb on - strand, within SMc02403at 1155.066 kb on - strand, within SMc02403at 1155.091 kb on - strand, within SMc02403at 1155.091 kb on - strand, within SMc02403at 1155.091 kb on - strand, within SMc02403at 1155.227 kb on + strand, within SMc02403at 1155.227 kb on + strand, within SMc02403at 1155.227 kb on + strand, within SMc02403at 1155.227 kb on + strand, within SMc02403at 1155.614 kb on + strand, within SMc02403at 1155.615 kb on - strand, within SMc02403at 1155.615 kb on - strand, within SMc02403at 1155.619 kb on + strand, within SMc02403at 1155.727 kb on + strandat 1155.728 kb on - strandat 1155.728 kb on - strandat 1155.788 kb on + strandat 1155.927 kb on + strandat 1155.928 kb on - strandat 1155.928 kb on - strandat 1155.928 kb on - strandat 1156.148 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Myristic (C)
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1,152,862 + SMc02400 0.90 +2.3
1,152,862 + SMc02400 0.90 -0.3
1,152,863 - SMc02400 0.90 -0.9
1,152,863 - SMc02400 0.90 +0.1
1,152,863 - SMc02400 0.90 +1.3
1,152,863 - SMc02400 0.90 +0.2
1,152,869 + -0.2
1,152,894 - -1.0
1,152,929 + -0.4
1,152,929 + +0.9
1,152,930 - +0.6
1,152,962 + -0.2
1,153,004 - -0.2
1,153,020 + -1.1
1,153,020 + -0.7
1,153,020 + +1.4
1,153,020 + +0.2
1,153,020 + +0.0
1,153,021 - +2.1
1,153,021 - +0.8
1,153,021 - +0.0
1,153,021 - +2.3
1,153,037 - -0.7
1,153,168 - +0.9
1,153,188 - +0.2
1,153,188 - +1.2
1,153,188 - -0.3
1,153,199 - -1.4
1,153,221 - -0.2
1,153,222 + -0.4
1,153,222 + -0.6
1,153,235 + SMc02401 0.11 +0.3
1,153,236 - SMc02401 0.11 +1.0
1,153,236 - SMc02401 0.11 -1.2
1,153,236 - SMc02401 0.11 -0.3
1,153,236 - SMc02401 0.11 -0.0
1,153,236 - SMc02401 0.11 +0.2
1,153,270 + SMc02401 0.18 -0.2
1,153,270 + SMc02401 0.18 +0.1
1,153,321 + SMc02401 0.29 -0.1
1,153,321 + SMc02401 0.29 -2.4
1,153,456 + SMc02401 0.57 -0.5
1,153,456 + SMc02401 0.57 -0.8
1,153,457 - SMc02401 0.58 +0.3
1,153,457 - SMc02401 0.58 -0.1
1,153,457 - SMc02401 0.58 -0.7
1,153,460 + SMc02401 0.58 -0.3
1,153,460 + SMc02401 0.58 -0.3
1,153,460 + SMc02401 0.58 -0.4
1,153,461 - SMc02401 0.58 -1.4
1,153,461 - SMc02401 0.58 +0.7
1,153,461 - SMc02401 0.58 +1.0
1,153,461 - SMc02401 0.58 -0.6
1,153,461 - SMc02401 0.58 -0.4
1,153,461 - SMc02401 0.58 +0.2
1,153,466 + SMc02401 0.60 +1.1
1,153,466 + SMc02401 0.60 +1.6
1,153,903 + -1.3
1,153,938 + -0.3
1,153,939 - -2.2
1,154,056 + SMc02403 0.11 -2.0
1,154,056 + SMc02403 0.11 -2.1
1,154,058 + SMc02403 0.11 +0.5
1,154,058 + SMc02403 0.11 +0.0
1,154,058 + SMc02403 0.11 -1.4
1,154,059 - SMc02403 0.11 -0.6
1,154,079 + SMc02403 0.12 -1.6
1,154,079 + SMc02403 0.12 -1.2
1,154,079 + SMc02403 0.12 +0.6
1,154,079 + SMc02403 0.12 -1.2
1,154,079 + SMc02403 0.12 -1.1
1,154,080 - SMc02403 0.12 -2.8
1,154,080 - SMc02403 0.12 -1.1
1,154,080 - SMc02403 0.12 -2.9
1,154,137 + SMc02403 0.15 -1.7
1,154,137 + SMc02403 0.15 -1.0
1,154,138 - SMc02403 0.15 -1.0
1,154,140 - SMc02403 0.15 -0.4
1,154,173 - SMc02403 0.16 -0.5
1,154,296 - SMc02403 0.22 -1.1
1,154,296 - SMc02403 0.22 -1.4
1,154,608 - SMc02403 0.38 -1.0
1,154,658 + SMc02403 0.40 -2.8
1,154,745 + SMc02403 0.44 +0.6
1,154,844 + SMc02403 0.49 -1.5
1,154,844 + SMc02403 0.49 -0.3
1,154,845 - SMc02403 0.49 -0.5
1,154,962 + SMc02403 0.55 -1.3
1,154,962 + SMc02403 0.55 -1.0
1,154,962 + SMc02403 0.55 -1.6
1,154,962 + SMc02403 0.55 -1.0
1,155,066 - SMc02403 0.60 -0.9
1,155,066 - SMc02403 0.60 -1.8
1,155,091 - SMc02403 0.61 -0.9
1,155,091 - SMc02403 0.61 -1.9
1,155,091 - SMc02403 0.61 -0.5
1,155,227 + SMc02403 0.68 -2.3
1,155,227 + SMc02403 0.68 -0.4
1,155,227 + SMc02403 0.68 -1.8
1,155,227 + SMc02403 0.68 +0.3
1,155,614 + SMc02403 0.87 -1.0
1,155,615 - SMc02403 0.87 -0.9
1,155,615 - SMc02403 0.87 -1.4
1,155,619 + SMc02403 0.87 -1.4
1,155,727 + -2.0
1,155,728 - -1.8
1,155,728 - -0.7
1,155,788 + -1.0
1,155,927 + -0.8
1,155,928 - +0.1
1,155,928 - +1.1
1,155,928 - +0.4
1,156,148 + -2.6

Or see this region's nucleotide sequence