Strain Fitness in Sinorhizobium meliloti 1021 around SMc02356

Experiment: Myristic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02354 and SMc02355 overlap by 14 nucleotidesSMc02355 and SMc02356 are separated by 120 nucleotidesSMc02356 and SMc02357 are separated by 51 nucleotidesSMc02357 and SMc02358 overlap by 8 nucleotides SMc02354: SMc02354 - hypothetical protein, at 2,775,918 to 2,776,733 SMc02354 SMc02355: SMc02355 - hypothetical protein, at 2,776,720 to 2,777,373 SMc02355 SMc02356: SMc02356 - branched chain amino acid ABC transporter periplasmic protein, at 2,777,494 to 2,778,666 SMc02356 SMc02357: SMc02357 - high-affinity branched-chain amino acid ABC transporter ATP-binding protein, at 2,778,718 to 2,779,452 SMc02357 SMc02358: SMc02358 - high-affinity branched-chain amino acid ABC transporter ATP-binding protein, at 2,779,445 to 2,780,152 SMc02358 Position (kb) 2777 2778 2779Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2776.543 kb on - strand, within SMc02354at 2776.566 kb on + strand, within SMc02354at 2776.867 kb on + strand, within SMc02355at 2776.867 kb on + strand, within SMc02355at 2776.867 kb on + strand, within SMc02355at 2776.867 kb on + strand, within SMc02355at 2776.868 kb on - strand, within SMc02355at 2776.874 kb on - strand, within SMc02355at 2777.012 kb on - strand, within SMc02355at 2777.055 kb on + strand, within SMc02355at 2777.056 kb on - strand, within SMc02355at 2777.056 kb on - strand, within SMc02355at 2777.056 kb on - strand, within SMc02355at 2777.056 kb on - strand, within SMc02355at 2777.060 kb on + strand, within SMc02355at 2777.060 kb on + strand, within SMc02355at 2777.143 kb on + strand, within SMc02355at 2777.143 kb on + strand, within SMc02355at 2777.144 kb on - strand, within SMc02355at 2777.177 kb on + strand, within SMc02355at 2777.177 kb on + strand, within SMc02355at 2777.177 kb on + strand, within SMc02355at 2777.178 kb on - strand, within SMc02355at 2777.242 kb on + strand, within SMc02355at 2777.242 kb on + strand, within SMc02355at 2777.324 kb on - strandat 2777.324 kb on - strandat 2777.372 kb on - strandat 2777.402 kb on + strandat 2777.402 kb on + strandat 2777.402 kb on + strandat 2777.402 kb on + strandat 2777.403 kb on - strandat 2777.403 kb on - strandat 2777.403 kb on - strandat 2777.403 kb on - strandat 2777.411 kb on + strandat 2777.411 kb on + strandat 2777.411 kb on + strandat 2777.411 kb on + strandat 2777.480 kb on + strandat 2777.480 kb on + strandat 2777.662 kb on + strand, within SMc02356at 2777.662 kb on + strand, within SMc02356at 2777.663 kb on - strand, within SMc02356at 2777.663 kb on - strand, within SMc02356at 2777.934 kb on + strand, within SMc02356at 2777.995 kb on + strand, within SMc02356at 2777.996 kb on - strand, within SMc02356at 2777.996 kb on - strand, within SMc02356at 2777.996 kb on - strand, within SMc02356at 2777.996 kb on - strand, within SMc02356at 2778.022 kb on + strand, within SMc02356at 2778.022 kb on + strand, within SMc02356at 2778.023 kb on - strand, within SMc02356at 2778.023 kb on - strand, within SMc02356at 2778.024 kb on + strand, within SMc02356at 2778.025 kb on - strand, within SMc02356at 2778.025 kb on - strand, within SMc02356at 2778.025 kb on - strand, within SMc02356at 2778.025 kb on - strand, within SMc02356at 2778.097 kb on + strand, within SMc02356at 2778.097 kb on + strand, within SMc02356at 2778.098 kb on - strand, within SMc02356at 2778.098 kb on - strand, within SMc02356at 2778.098 kb on - strand, within SMc02356at 2778.185 kb on - strand, within SMc02356at 2778.262 kb on + strand, within SMc02356at 2778.262 kb on + strand, within SMc02356at 2778.316 kb on + strand, within SMc02356at 2778.316 kb on + strand, within SMc02356at 2778.316 kb on + strand, within SMc02356at 2778.317 kb on - strand, within SMc02356at 2778.317 kb on - strand, within SMc02356at 2778.330 kb on + strand, within SMc02356at 2778.383 kb on - strand, within SMc02356at 2778.383 kb on - strand, within SMc02356at 2778.439 kb on - strand, within SMc02356at 2778.640 kb on - strandat 2778.657 kb on + strandat 2778.984 kb on - strand, within SMc02357at 2778.984 kb on - strand, within SMc02357at 2778.999 kb on + strand, within SMc02357at 2778.999 kb on + strand, within SMc02357at 2778.999 kb on + strand, within SMc02357at 2778.999 kb on + strand, within SMc02357at 2779.000 kb on - strand, within SMc02357at 2779.138 kb on + strand, within SMc02357at 2779.138 kb on + strand, within SMc02357at 2779.139 kb on - strand, within SMc02357at 2779.139 kb on - strand, within SMc02357at 2779.139 kb on - strand, within SMc02357at 2779.423 kb on + strandat 2779.423 kb on + strandat 2779.423 kb on + strandat 2779.424 kb on - strandat 2779.455 kb on + strandat 2779.456 kb on - strandat 2779.476 kb on - strandat 2779.476 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Myristic (C)
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2,776,543 - SMc02354 0.77 -1.3
2,776,566 + SMc02354 0.79 +1.3
2,776,867 + SMc02355 0.22 +0.5
2,776,867 + SMc02355 0.22 +0.3
2,776,867 + SMc02355 0.22 +0.9
2,776,867 + SMc02355 0.22 +0.5
2,776,868 - SMc02355 0.23 +0.6
2,776,874 - SMc02355 0.24 -0.3
2,777,012 - SMc02355 0.45 -0.1
2,777,055 + SMc02355 0.51 +0.4
2,777,056 - SMc02355 0.51 -0.4
2,777,056 - SMc02355 0.51 +0.7
2,777,056 - SMc02355 0.51 +1.1
2,777,056 - SMc02355 0.51 +4.0
2,777,060 + SMc02355 0.52 +0.4
2,777,060 + SMc02355 0.52 +1.1
2,777,143 + SMc02355 0.65 +0.5
2,777,143 + SMc02355 0.65 +0.7
2,777,144 - SMc02355 0.65 +0.8
2,777,177 + SMc02355 0.70 +0.7
2,777,177 + SMc02355 0.70 -0.1
2,777,177 + SMc02355 0.70 +0.0
2,777,178 - SMc02355 0.70 -0.3
2,777,242 + SMc02355 0.80 -0.8
2,777,242 + SMc02355 0.80 -0.1
2,777,324 - +0.0
2,777,324 - -0.1
2,777,372 - +1.5
2,777,402 + -0.4
2,777,402 + +0.6
2,777,402 + +0.7
2,777,402 + +0.4
2,777,403 - -0.4
2,777,403 - -0.5
2,777,403 - +0.8
2,777,403 - +0.2
2,777,411 + +0.4
2,777,411 + +0.5
2,777,411 + +2.3
2,777,411 + -1.1
2,777,480 + -1.5
2,777,480 + -0.6
2,777,662 + SMc02356 0.14 +0.1
2,777,662 + SMc02356 0.14 -0.6
2,777,663 - SMc02356 0.14 +0.1
2,777,663 - SMc02356 0.14 +0.5
2,777,934 + SMc02356 0.38 -0.9
2,777,995 + SMc02356 0.43 -0.7
2,777,996 - SMc02356 0.43 -0.2
2,777,996 - SMc02356 0.43 -0.1
2,777,996 - SMc02356 0.43 -1.0
2,777,996 - SMc02356 0.43 -1.2
2,778,022 + SMc02356 0.45 +0.0
2,778,022 + SMc02356 0.45 +0.6
2,778,023 - SMc02356 0.45 +0.5
2,778,023 - SMc02356 0.45 -1.1
2,778,024 + SMc02356 0.45 -0.3
2,778,025 - SMc02356 0.45 -0.9
2,778,025 - SMc02356 0.45 -0.7
2,778,025 - SMc02356 0.45 -0.5
2,778,025 - SMc02356 0.45 -0.9
2,778,097 + SMc02356 0.51 -0.5
2,778,097 + SMc02356 0.51 -0.0
2,778,098 - SMc02356 0.51 -0.4
2,778,098 - SMc02356 0.51 -0.3
2,778,098 - SMc02356 0.51 -0.7
2,778,185 - SMc02356 0.59 -0.2
2,778,262 + SMc02356 0.65 -0.2
2,778,262 + SMc02356 0.65 -0.5
2,778,316 + SMc02356 0.70 +0.8
2,778,316 + SMc02356 0.70 -0.3
2,778,316 + SMc02356 0.70 +0.3
2,778,317 - SMc02356 0.70 -0.1
2,778,317 - SMc02356 0.70 +0.8
2,778,330 + SMc02356 0.71 +0.2
2,778,383 - SMc02356 0.76 -1.0
2,778,383 - SMc02356 0.76 +0.6
2,778,439 - SMc02356 0.81 -0.8
2,778,640 - +0.1
2,778,657 + +0.0
2,778,984 - SMc02357 0.36 +0.3
2,778,984 - SMc02357 0.36 -0.7
2,778,999 + SMc02357 0.38 +0.2
2,778,999 + SMc02357 0.38 +0.3
2,778,999 + SMc02357 0.38 +1.0
2,778,999 + SMc02357 0.38 -1.5
2,779,000 - SMc02357 0.38 -0.0
2,779,138 + SMc02357 0.57 +0.5
2,779,138 + SMc02357 0.57 +0.6
2,779,139 - SMc02357 0.57 -0.2
2,779,139 - SMc02357 0.57 +0.1
2,779,139 - SMc02357 0.57 -0.3
2,779,423 + +0.5
2,779,423 + +0.8
2,779,423 + +0.9
2,779,424 - -1.1
2,779,455 + +0.5
2,779,456 - -0.2
2,779,476 - -0.3
2,779,476 - -1.9

Or see this region's nucleotide sequence