Strain Fitness in Sinorhizobium meliloti 1021 around SMa2127

Experiment: Myristic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2125 and SMa2127 overlap by 32 nucleotidesSMa2127 and SMa2129 are separated by 32 nucleotides SMa2125: SMa2125 - ABC transporter permease, at 1,200,660 to 1,201,739 SMa2125 SMa2127: SMa2127 - ABC transporter ATP-binding protein, at 1,201,708 to 1,203,258 SMa2127 SMa2129: SMa2129 - hypothetical protein, at 1,203,291 to 1,204,310 SMa2129 Position (kb) 1201 1202 1203 1204Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1200.791 kb on - strand, within SMa2125at 1201.063 kb on + strand, within SMa2125at 1201.064 kb on - strand, within SMa2125at 1201.208 kb on - strand, within SMa2125at 1201.256 kb on - strand, within SMa2125at 1201.256 kb on - strand, within SMa2125at 1201.256 kb on - strand, within SMa2125at 1201.277 kb on + strand, within SMa2125at 1201.279 kb on + strand, within SMa2125at 1201.280 kb on - strand, within SMa2125at 1201.280 kb on - strand, within SMa2125at 1201.280 kb on - strand, within SMa2125at 1201.391 kb on + strand, within SMa2125at 1201.391 kb on + strand, within SMa2125at 1201.438 kb on + strand, within SMa2125at 1201.439 kb on - strand, within SMa2125at 1201.684 kb on + strandat 1201.685 kb on - strandat 1201.685 kb on - strandat 1201.710 kb on - strandat 1201.943 kb on + strand, within SMa2127at 1202.179 kb on - strand, within SMa2127at 1202.302 kb on + strand, within SMa2127at 1202.796 kb on - strand, within SMa2127at 1202.962 kb on - strand, within SMa2127at 1203.049 kb on + strand, within SMa2127at 1203.099 kb on - strand, within SMa2127at 1203.099 kb on - strand, within SMa2127at 1203.099 kb on - strand, within SMa2127at 1203.101 kb on + strand, within SMa2127at 1203.101 kb on + strand, within SMa2127at 1203.276 kb on - strandat 1203.276 kb on - strandat 1203.437 kb on + strand, within SMa2129at 1203.438 kb on - strand, within SMa2129at 1203.438 kb on - strand, within SMa2129at 1203.470 kb on - strand, within SMa2129at 1203.553 kb on - strand, within SMa2129at 1203.554 kb on + strand, within SMa2129at 1203.591 kb on - strand, within SMa2129at 1203.874 kb on + strand, within SMa2129at 1203.875 kb on - strand, within SMa2129at 1203.875 kb on - strand, within SMa2129at 1203.875 kb on - strand, within SMa2129at 1203.898 kb on + strand, within SMa2129at 1203.898 kb on + strand, within SMa2129at 1203.907 kb on + strand, within SMa2129at 1203.908 kb on - strand, within SMa2129at 1203.908 kb on - strand, within SMa2129at 1203.988 kb on - strand, within SMa2129at 1204.019 kb on + strand, within SMa2129at 1204.020 kb on - strand, within SMa2129at 1204.105 kb on - strand, within SMa2129at 1204.105 kb on - strand, within SMa2129at 1204.105 kb on - strand, within SMa2129

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Per-strain Table

Position Strand Gene LocusTag Fraction Myristic (C)
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1,200,791 - SMa2125 0.12 +1.2
1,201,063 + SMa2125 0.37 +1.7
1,201,064 - SMa2125 0.37 -3.3
1,201,208 - SMa2125 0.51 -0.5
1,201,256 - SMa2125 0.55 -0.6
1,201,256 - SMa2125 0.55 -0.7
1,201,256 - SMa2125 0.55 +1.0
1,201,277 + SMa2125 0.57 -0.2
1,201,279 + SMa2125 0.57 -0.7
1,201,280 - SMa2125 0.57 +0.5
1,201,280 - SMa2125 0.57 -1.0
1,201,280 - SMa2125 0.57 -1.0
1,201,391 + SMa2125 0.68 +0.1
1,201,391 + SMa2125 0.68 -0.9
1,201,438 + SMa2125 0.72 +0.1
1,201,439 - SMa2125 0.72 -0.8
1,201,684 + +0.6
1,201,685 - +1.2
1,201,685 - +1.9
1,201,710 - +0.2
1,201,943 + SMa2127 0.15 -0.1
1,202,179 - SMa2127 0.30 -1.5
1,202,302 + SMa2127 0.38 +1.1
1,202,796 - SMa2127 0.70 -0.1
1,202,962 - SMa2127 0.81 -1.3
1,203,049 + SMa2127 0.86 -0.5
1,203,099 - SMa2127 0.90 -0.6
1,203,099 - SMa2127 0.90 -0.6
1,203,099 - SMa2127 0.90 -0.1
1,203,101 + SMa2127 0.90 -0.2
1,203,101 + SMa2127 0.90 -0.7
1,203,276 - +0.7
1,203,276 - -0.5
1,203,437 + SMa2129 0.14 -0.6
1,203,438 - SMa2129 0.14 +0.3
1,203,438 - SMa2129 0.14 -0.3
1,203,470 - SMa2129 0.18 +1.8
1,203,553 - SMa2129 0.26 +0.8
1,203,554 + SMa2129 0.26 +0.9
1,203,591 - SMa2129 0.29 -1.5
1,203,874 + SMa2129 0.57 +2.2
1,203,875 - SMa2129 0.57 -0.7
1,203,875 - SMa2129 0.57 -0.3
1,203,875 - SMa2129 0.57 +0.3
1,203,898 + SMa2129 0.60 -0.2
1,203,898 + SMa2129 0.60 -0.3
1,203,907 + SMa2129 0.60 -1.4
1,203,908 - SMa2129 0.60 +0.1
1,203,908 - SMa2129 0.60 +0.2
1,203,988 - SMa2129 0.68 +0.0
1,204,019 + SMa2129 0.71 -0.1
1,204,020 - SMa2129 0.71 -1.2
1,204,105 - SMa2129 0.80 -0.5
1,204,105 - SMa2129 0.80 -0.2
1,204,105 - SMa2129 0.80 -0.3

Or see this region's nucleotide sequence