Strain Fitness in Sinorhizobium meliloti 1021 around SMa1836

Experiment: Myristic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMa1835 and SMa1836 are separated by 310 nucleotidesSMa1836 and SMa1838 are separated by 11 nucleotides SMa1835: SMa1835 - hypothetical protein, at 1,041,083 to 1,041,991 SMa1835 SMa1836: SMa1836 - acetylornithine deacetylase, at 1,042,302 to 1,043,426 SMa1836 SMa1838: SMa1838 - dehydrogenase, at 1,043,438 to 1,044,361 SMa1838 Position (kb) 1042 1043 1044Strain fitness (log2 ratio) -2 -1 0 1at 1041.393 kb on - strand, within SMa1835at 1041.570 kb on + strand, within SMa1835at 1041.570 kb on + strand, within SMa1835at 1041.570 kb on + strand, within SMa1835at 1041.570 kb on + strand, within SMa1835at 1041.571 kb on - strand, within SMa1835at 1041.571 kb on - strand, within SMa1835at 1041.571 kb on - strand, within SMa1835at 1041.571 kb on - strand, within SMa1835at 1041.571 kb on - strand, within SMa1835at 1041.571 kb on - strand, within SMa1835at 1041.572 kb on + strand, within SMa1835at 1041.572 kb on + strand, within SMa1835at 1041.573 kb on - strand, within SMa1835at 1041.607 kb on - strand, within SMa1835at 1041.735 kb on - strand, within SMa1835at 1041.811 kb on - strand, within SMa1835at 1042.149 kb on + strandat 1042.150 kb on - strandat 1042.168 kb on + strandat 1042.168 kb on + strandat 1042.168 kb on + strandat 1042.168 kb on + strandat 1042.169 kb on - strandat 1042.169 kb on - strandat 1042.169 kb on - strandat 1042.169 kb on - strandat 1042.169 kb on - strandat 1042.173 kb on + strandat 1042.173 kb on + strandat 1042.173 kb on + strandat 1042.173 kb on + strandat 1042.173 kb on + strandat 1042.192 kb on - strandat 1042.231 kb on + strandat 1042.322 kb on - strandat 1042.361 kb on + strandat 1042.361 kb on + strandat 1042.362 kb on - strandat 1042.362 kb on - strandat 1042.362 kb on - strandat 1042.453 kb on - strand, within SMa1836at 1042.491 kb on + strand, within SMa1836at 1042.492 kb on - strand, within SMa1836at 1042.492 kb on - strand, within SMa1836at 1042.493 kb on + strand, within SMa1836at 1042.496 kb on + strand, within SMa1836at 1042.496 kb on + strand, within SMa1836at 1042.497 kb on - strand, within SMa1836at 1042.497 kb on - strand, within SMa1836at 1042.497 kb on - strand, within SMa1836at 1042.508 kb on + strand, within SMa1836at 1042.584 kb on + strand, within SMa1836at 1042.584 kb on + strand, within SMa1836at 1042.585 kb on - strand, within SMa1836at 1042.585 kb on - strand, within SMa1836at 1042.692 kb on + strand, within SMa1836at 1042.692 kb on + strand, within SMa1836at 1042.693 kb on - strand, within SMa1836at 1042.693 kb on - strand, within SMa1836at 1042.721 kb on - strand, within SMa1836at 1042.984 kb on - strand, within SMa1836at 1043.008 kb on + strand, within SMa1836at 1043.140 kb on + strand, within SMa1836at 1043.140 kb on + strand, within SMa1836at 1043.141 kb on - strand, within SMa1836at 1043.262 kb on + strand, within SMa1836at 1043.355 kb on + strandat 1043.355 kb on + strandat 1043.355 kb on + strandat 1043.355 kb on + strandat 1043.356 kb on - strandat 1043.356 kb on - strandat 1043.424 kb on + strandat 1043.425 kb on - strandat 1043.425 kb on - strandat 1043.726 kb on + strand, within SMa1838at 1043.727 kb on - strand, within SMa1838at 1043.955 kb on + strand, within SMa1838at 1044.046 kb on + strand, within SMa1838at 1044.046 kb on + strand, within SMa1838at 1044.356 kb on + strandat 1044.387 kb on + strandat 1044.388 kb on - strandat 1044.388 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Myristic (C)
remove
1,041,393 - SMa1835 0.34 +0.0
1,041,570 + SMa1835 0.54 +0.4
1,041,570 + SMa1835 0.54 -0.1
1,041,570 + SMa1835 0.54 -0.1
1,041,570 + SMa1835 0.54 +0.0
1,041,571 - SMa1835 0.54 +0.1
1,041,571 - SMa1835 0.54 +0.2
1,041,571 - SMa1835 0.54 -1.6
1,041,571 - SMa1835 0.54 -0.0
1,041,571 - SMa1835 0.54 +0.1
1,041,571 - SMa1835 0.54 -0.1
1,041,572 + SMa1835 0.54 +0.1
1,041,572 + SMa1835 0.54 -0.0
1,041,573 - SMa1835 0.54 +0.7
1,041,607 - SMa1835 0.58 -0.7
1,041,735 - SMa1835 0.72 -0.2
1,041,811 - SMa1835 0.80 +0.7
1,042,149 + +0.4
1,042,150 - -0.6
1,042,168 + -2.7
1,042,168 + -0.5
1,042,168 + -0.8
1,042,168 + -0.2
1,042,169 - +0.1
1,042,169 - -0.3
1,042,169 - -0.6
1,042,169 - -0.1
1,042,169 - -0.7
1,042,173 + -1.2
1,042,173 + -0.5
1,042,173 + -0.2
1,042,173 + -0.4
1,042,173 + -0.6
1,042,192 - -0.1
1,042,231 + +0.5
1,042,322 - -0.2
1,042,361 + -0.1
1,042,361 + -0.2
1,042,362 - +0.2
1,042,362 - +0.9
1,042,362 - +0.1
1,042,453 - SMa1836 0.13 +0.8
1,042,491 + SMa1836 0.17 +0.6
1,042,492 - SMa1836 0.17 +0.9
1,042,492 - SMa1836 0.17 -1.0
1,042,493 + SMa1836 0.17 -0.2
1,042,496 + SMa1836 0.17 -0.5
1,042,496 + SMa1836 0.17 +0.6
1,042,497 - SMa1836 0.17 +0.0
1,042,497 - SMa1836 0.17 -0.2
1,042,497 - SMa1836 0.17 +0.5
1,042,508 + SMa1836 0.18 +0.2
1,042,584 + SMa1836 0.25 -0.2
1,042,584 + SMa1836 0.25 +1.1
1,042,585 - SMa1836 0.25 +1.3
1,042,585 - SMa1836 0.25 +0.5
1,042,692 + SMa1836 0.35 +0.5
1,042,692 + SMa1836 0.35 -0.2
1,042,693 - SMa1836 0.35 -0.0
1,042,693 - SMa1836 0.35 +0.3
1,042,721 - SMa1836 0.37 +0.1
1,042,984 - SMa1836 0.61 +0.1
1,043,008 + SMa1836 0.63 +0.1
1,043,140 + SMa1836 0.74 -0.1
1,043,140 + SMa1836 0.74 -0.1
1,043,141 - SMa1836 0.75 +0.9
1,043,262 + SMa1836 0.85 -1.1
1,043,355 + -0.1
1,043,355 + -0.3
1,043,355 + +0.1
1,043,355 + -0.4
1,043,356 - +0.1
1,043,356 - -1.3
1,043,424 + -0.0
1,043,425 - -0.0
1,043,425 - -1.4
1,043,726 + SMa1838 0.31 -0.6
1,043,727 - SMa1838 0.31 -0.1
1,043,955 + SMa1838 0.56 -0.3
1,044,046 + SMa1838 0.66 -1.6
1,044,046 + SMa1838 0.66 -0.8
1,044,356 + +0.2
1,044,387 + -0.4
1,044,388 - -0.6
1,044,388 - -0.9

Or see this region's nucleotide sequence