Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21260

Experiment: Myristic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21259 and SM_b21260 are separated by 309 nucleotidesSM_b21260 and SM_b21261 overlap by 4 nucleotides SM_b21259: SM_b21259 - hypothetical protein, at 829,812 to 830,792 _b21259 SM_b21260: SM_b21260 - mureinpeptideoligopeptide ABC transporter ATP-binding protein, at 831,102 to 832,994 _b21260 SM_b21261: SM_b21261 - mureinpeptideoligopeptide ABC transporter substrate-binding protein precursor, at 832,991 to 834,892 _b21261 Position (kb) 831 832 833Strain fitness (log2 ratio) -2 -1 0 1 2at 830.136 kb on + strand, within SM_b21259at 830.155 kb on - strand, within SM_b21259at 830.168 kb on - strand, within SM_b21259at 830.205 kb on + strand, within SM_b21259at 830.587 kb on + strand, within SM_b21259at 830.587 kb on + strand, within SM_b21259at 830.587 kb on + strand, within SM_b21259at 830.587 kb on + strand, within SM_b21259at 830.588 kb on - strand, within SM_b21259at 830.588 kb on - strand, within SM_b21259at 830.635 kb on + strand, within SM_b21259at 830.635 kb on + strand, within SM_b21259at 830.670 kb on + strand, within SM_b21259at 830.721 kb on + strandat 830.722 kb on - strandat 830.724 kb on + strandat 830.725 kb on - strandat 830.849 kb on + strandat 830.849 kb on + strandat 830.850 kb on - strandat 830.914 kb on - strandat 830.914 kb on - strandat 830.940 kb on + strandat 830.941 kb on - strandat 830.948 kb on + strandat 830.948 kb on + strandat 831.082 kb on - strandat 831.082 kb on - strandat 831.576 kb on + strand, within SM_b21260at 831.577 kb on - strand, within SM_b21260at 831.585 kb on + strand, within SM_b21260at 831.585 kb on + strand, within SM_b21260at 831.586 kb on - strand, within SM_b21260at 831.819 kb on + strand, within SM_b21260at 831.819 kb on + strand, within SM_b21260at 831.819 kb on + strand, within SM_b21260at 831.820 kb on - strand, within SM_b21260at 831.820 kb on - strandat 831.883 kb on - strand, within SM_b21260at 832.095 kb on + strand, within SM_b21260at 832.096 kb on - strand, within SM_b21260at 832.189 kb on + strand, within SM_b21260at 832.483 kb on - strand, within SM_b21260at 832.689 kb on + strand, within SM_b21260at 832.689 kb on + strand, within SM_b21260at 832.690 kb on - strand, within SM_b21260at 832.690 kb on - strand, within SM_b21260at 832.779 kb on + strand, within SM_b21260at 832.826 kb on + strandat 832.919 kb on + strandat 832.919 kb on + strandat 832.920 kb on - strandat 832.920 kb on - strandat 832.948 kb on - strandat 833.244 kb on - strand, within SM_b21261at 833.329 kb on + strand, within SM_b21261at 833.329 kb on + strand, within SM_b21261at 833.330 kb on - strand, within SM_b21261at 833.330 kb on - strand, within SM_b21261at 833.805 kb on - strand, within SM_b21261at 833.807 kb on + strand, within SM_b21261at 833.807 kb on + strand, within SM_b21261at 833.808 kb on - strand, within SM_b21261at 833.843 kb on + strand, within SM_b21261at 833.844 kb on - strand, within SM_b21261at 833.845 kb on + strand, within SM_b21261at 833.845 kb on + strand, within SM_b21261at 833.845 kb on + strand, within SM_b21261at 833.846 kb on - strand, within SM_b21261at 833.846 kb on - strand, within SM_b21261at 833.846 kb on - strand, within SM_b21261at 833.846 kb on - strand, within SM_b21261at 833.846 kb on - strand, within SM_b21261at 833.928 kb on - strand, within SM_b21261at 833.948 kb on + strand, within SM_b21261at 833.948 kb on + strand, within SM_b21261at 833.948 kb on + strand, within SM_b21261at 833.949 kb on - strand, within SM_b21261at 833.949 kb on - strand, within SM_b21261at 833.950 kb on + strand, within SM_b21261at 833.950 kb on + strand, within SM_b21261at 833.950 kb on + strand, within SM_b21261at 833.950 kb on + strand, within SM_b21261at 833.950 kb on + strand, within SM_b21261at 833.950 kb on + strand, within SM_b21261at 833.951 kb on - strand, within SM_b21261at 833.951 kb on - strand, within SM_b21261at 833.951 kb on - strand, within SM_b21261at 833.951 kb on - strand, within SM_b21261at 833.951 kb on - strand, within SM_b21261at 833.951 kb on - strand, within SM_b21261at 833.951 kb on - strand, within SM_b21261at 833.951 kb on - strand, within SM_b21261at 833.951 kb on - strand, within SM_b21261at 833.954 kb on + strand, within SM_b21261at 833.954 kb on + strand, within SM_b21261at 833.955 kb on - strand, within SM_b21261

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Per-strain Table

Position Strand Gene LocusTag Fraction Myristic (C)
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830,136 + SM_b21259 0.33 +0.5
830,155 - SM_b21259 0.35 -0.3
830,168 - SM_b21259 0.36 +1.3
830,205 + SM_b21259 0.40 -0.3
830,587 + SM_b21259 0.79 -0.9
830,587 + SM_b21259 0.79 +0.5
830,587 + SM_b21259 0.79 +0.3
830,587 + SM_b21259 0.79 -1.5
830,588 - SM_b21259 0.79 +1.1
830,588 - SM_b21259 0.79 +0.6
830,635 + SM_b21259 0.84 -0.2
830,635 + SM_b21259 0.84 +0.3
830,670 + SM_b21259 0.87 -1.2
830,721 + -0.2
830,722 - -0.5
830,724 + +0.3
830,725 - -1.0
830,849 + +1.0
830,849 + +0.9
830,850 - +0.9
830,914 - -0.2
830,914 - -0.8
830,940 + -0.7
830,941 - +1.0
830,948 + +0.0
830,948 + -0.4
831,082 - -0.4
831,082 - -1.2
831,576 + SM_b21260 0.25 +0.2
831,577 - SM_b21260 0.25 -1.7
831,585 + SM_b21260 0.26 -0.0
831,585 + SM_b21260 0.26 -0.1
831,586 - SM_b21260 0.26 -1.0
831,819 + SM_b21260 0.38 +0.0
831,819 + SM_b21260 0.38 -0.2
831,819 + SM_b21260 0.38 +1.0
831,820 - SM_b21260 0.38 -1.5
831,820 - +0.3
831,883 - SM_b21260 0.41 -1.5
832,095 + SM_b21260 0.52 -0.1
832,096 - SM_b21260 0.53 -0.7
832,189 + SM_b21260 0.57 -1.0
832,483 - SM_b21260 0.73 -1.2
832,689 + SM_b21260 0.84 +0.3
832,689 + SM_b21260 0.84 +2.3
832,690 - SM_b21260 0.84 -1.0
832,690 - SM_b21260 0.84 -1.4
832,779 + SM_b21260 0.89 -0.6
832,826 + +0.2
832,919 + +0.0
832,919 + -0.7
832,920 - -1.2
832,920 - -2.7
832,948 - -0.9
833,244 - SM_b21261 0.13 -0.7
833,329 + SM_b21261 0.18 -1.7
833,329 + SM_b21261 0.18 -2.1
833,330 - SM_b21261 0.18 -0.2
833,330 - SM_b21261 0.18 +0.3
833,805 - SM_b21261 0.43 -0.2
833,807 + SM_b21261 0.43 -1.5
833,807 + SM_b21261 0.43 -1.4
833,808 - SM_b21261 0.43 -1.8
833,843 + SM_b21261 0.45 -1.8
833,844 - SM_b21261 0.45 -0.4
833,845 + SM_b21261 0.45 -1.5
833,845 + SM_b21261 0.45 +0.3
833,845 + SM_b21261 0.45 -2.4
833,846 - SM_b21261 0.45 -1.3
833,846 - SM_b21261 0.45 -0.6
833,846 - SM_b21261 0.45 -0.7
833,846 - SM_b21261 0.45 +0.6
833,846 - SM_b21261 0.45 -1.7
833,928 - SM_b21261 0.49 -0.4
833,948 + SM_b21261 0.50 -0.4
833,948 + SM_b21261 0.50 -1.6
833,948 + SM_b21261 0.50 +0.3
833,949 - SM_b21261 0.50 -0.2
833,949 - SM_b21261 0.50 +0.3
833,950 + SM_b21261 0.50 -0.9
833,950 + SM_b21261 0.50 -1.3
833,950 + SM_b21261 0.50 -2.7
833,950 + SM_b21261 0.50 +0.0
833,950 + SM_b21261 0.50 -0.2
833,950 + SM_b21261 0.50 -0.7
833,951 - SM_b21261 0.50 -1.4
833,951 - SM_b21261 0.50 +1.9
833,951 - SM_b21261 0.50 -2.0
833,951 - SM_b21261 0.50 +1.3
833,951 - SM_b21261 0.50 -1.5
833,951 - SM_b21261 0.50 -1.0
833,951 - SM_b21261 0.50 -1.6
833,951 - SM_b21261 0.50 -1.4
833,951 - SM_b21261 0.50 -1.7
833,954 + SM_b21261 0.51 -0.8
833,954 + SM_b21261 0.51 -2.3
833,955 - SM_b21261 0.51 -1.2

Or see this region's nucleotide sequence