Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20991

Experiment: Myristic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20990 and SM_b20991 are separated by 128 nucleotidesSM_b20991 and SM_b20992 are separated by 133 nucleotides SM_b20990: SM_b20990 - membrane protein necessary for nodulation competitiveness, at 1,223,683 to 1,225,119 _b20990 SM_b20991: SM_b20991 - hypothetical protein, at 1,225,248 to 1,226,711 _b20991 SM_b20992: SM_b20992 - hypothetical protein, at 1,226,845 to 1,228,248 _b20992 Position (kb) 1225 1226 1227Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1224.249 kb on - strand, within SM_b20990at 1224.741 kb on - strand, within SM_b20990at 1224.747 kb on + strandat 1224.747 kb on + strand, within SM_b20990at 1224.748 kb on - strand, within SM_b20990at 1224.748 kb on - strand, within SM_b20990at 1224.749 kb on + strand, within SM_b20990at 1224.749 kb on + strand, within SM_b20990at 1224.749 kb on + strand, within SM_b20990at 1224.750 kb on - strand, within SM_b20990at 1224.750 kb on - strand, within SM_b20990at 1224.750 kb on - strand, within SM_b20990at 1224.750 kb on - strand, within SM_b20990at 1224.750 kb on - strand, within SM_b20990at 1224.750 kb on - strand, within SM_b20990at 1224.750 kb on - strand, within SM_b20990at 1224.750 kb on - strand, within SM_b20990at 1224.830 kb on - strand, within SM_b20990at 1224.830 kb on - strand, within SM_b20990at 1224.830 kb on - strand, within SM_b20990at 1224.849 kb on + strand, within SM_b20990at 1224.850 kb on - strand, within SM_b20990at 1224.953 kb on - strand, within SM_b20990at 1225.112 kb on - strandat 1225.166 kb on + strandat 1225.166 kb on + strandat 1225.167 kb on - strandat 1225.169 kb on - strandat 1225.169 kb on - strandat 1225.501 kb on + strand, within SM_b20991at 1225.501 kb on + strand, within SM_b20991at 1225.501 kb on + strand, within SM_b20991at 1225.502 kb on - strand, within SM_b20991at 1225.502 kb on - strand, within SM_b20991at 1225.632 kb on - strand, within SM_b20991at 1225.661 kb on + strand, within SM_b20991at 1225.661 kb on + strand, within SM_b20991at 1225.662 kb on - strand, within SM_b20991at 1225.662 kb on - strand, within SM_b20991at 1225.689 kb on + strand, within SM_b20991at 1225.689 kb on + strand, within SM_b20991at 1225.689 kb on + strand, within SM_b20991at 1225.690 kb on - strand, within SM_b20991at 1225.690 kb on - strand, within SM_b20991at 1225.868 kb on + strand, within SM_b20991at 1225.868 kb on + strand, within SM_b20991at 1225.868 kb on + strandat 1225.868 kb on + strand, within SM_b20991at 1225.869 kb on - strand, within SM_b20991at 1225.869 kb on - strand, within SM_b20991at 1225.869 kb on - strand, within SM_b20991at 1225.960 kb on + strand, within SM_b20991at 1226.155 kb on + strand, within SM_b20991at 1226.155 kb on + strand, within SM_b20991at 1226.155 kb on + strand, within SM_b20991at 1226.156 kb on - strand, within SM_b20991at 1226.156 kb on - strand, within SM_b20991at 1226.247 kb on + strand, within SM_b20991at 1226.368 kb on + strand, within SM_b20991at 1226.395 kb on + strand, within SM_b20991at 1226.395 kb on + strand, within SM_b20991at 1226.541 kb on - strand, within SM_b20991at 1226.545 kb on + strand, within SM_b20991at 1226.545 kb on + strand, within SM_b20991at 1226.545 kb on + strand, within SM_b20991at 1226.546 kb on - strand, within SM_b20991at 1226.546 kb on - strand, within SM_b20991at 1226.711 kb on + strandat 1226.712 kb on - strandat 1226.781 kb on - strandat 1226.781 kb on - strandat 1226.839 kb on + strandat 1226.839 kb on + strandat 1226.840 kb on - strandat 1226.883 kb on + strandat 1226.901 kb on - strandat 1226.923 kb on + strandat 1226.923 kb on + strandat 1226.924 kb on - strandat 1227.028 kb on + strand, within SM_b20992at 1227.094 kb on - strand, within SM_b20992at 1227.299 kb on + strand, within SM_b20992at 1227.299 kb on + strand, within SM_b20992at 1227.516 kb on + strand, within SM_b20992at 1227.666 kb on + strand, within SM_b20992

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Myristic (C)
remove
1,224,249 - SM_b20990 0.39 +0.2
1,224,741 - SM_b20990 0.74 -0.9
1,224,747 + -0.2
1,224,747 + SM_b20990 0.74 -1.3
1,224,748 - SM_b20990 0.74 -0.5
1,224,748 - SM_b20990 0.74 -0.3
1,224,749 + SM_b20990 0.74 -1.2
1,224,749 + SM_b20990 0.74 -0.6
1,224,749 + SM_b20990 0.74 -0.0
1,224,750 - SM_b20990 0.74 +0.2
1,224,750 - SM_b20990 0.74 +0.0
1,224,750 - SM_b20990 0.74 +0.2
1,224,750 - SM_b20990 0.74 +0.0
1,224,750 - SM_b20990 0.74 +0.3
1,224,750 - SM_b20990 0.74 -0.3
1,224,750 - SM_b20990 0.74 +1.1
1,224,750 - SM_b20990 0.74 +0.3
1,224,830 - SM_b20990 0.80 -0.3
1,224,830 - SM_b20990 0.80 +1.4
1,224,830 - SM_b20990 0.80 -0.1
1,224,849 + SM_b20990 0.81 +0.4
1,224,850 - SM_b20990 0.81 -1.2
1,224,953 - SM_b20990 0.88 -0.5
1,225,112 - +0.0
1,225,166 + -0.0
1,225,166 + +0.5
1,225,167 - +0.0
1,225,169 - +0.3
1,225,169 - -0.4
1,225,501 + SM_b20991 0.17 -0.4
1,225,501 + SM_b20991 0.17 -0.2
1,225,501 + SM_b20991 0.17 +0.1
1,225,502 - SM_b20991 0.17 -0.5
1,225,502 - SM_b20991 0.17 +3.7
1,225,632 - SM_b20991 0.26 +0.3
1,225,661 + SM_b20991 0.28 -0.4
1,225,661 + SM_b20991 0.28 +0.3
1,225,662 - SM_b20991 0.28 -0.1
1,225,662 - SM_b20991 0.28 -0.2
1,225,689 + SM_b20991 0.30 -0.4
1,225,689 + SM_b20991 0.30 -1.0
1,225,689 + SM_b20991 0.30 -0.4
1,225,690 - SM_b20991 0.30 -0.6
1,225,690 - SM_b20991 0.30 -0.2
1,225,868 + SM_b20991 0.42 -0.2
1,225,868 + SM_b20991 0.42 -0.3
1,225,868 + -0.2
1,225,868 + SM_b20991 0.42 +0.3
1,225,869 - SM_b20991 0.42 -1.8
1,225,869 - SM_b20991 0.42 +0.2
1,225,869 - SM_b20991 0.42 -0.3
1,225,960 + SM_b20991 0.49 -0.3
1,226,155 + SM_b20991 0.62 +0.1
1,226,155 + SM_b20991 0.62 -0.4
1,226,155 + SM_b20991 0.62 -0.3
1,226,156 - SM_b20991 0.62 -0.2
1,226,156 - SM_b20991 0.62 -0.2
1,226,247 + SM_b20991 0.68 -0.3
1,226,368 + SM_b20991 0.77 +0.1
1,226,395 + SM_b20991 0.78 -2.7
1,226,395 + SM_b20991 0.78 +0.3
1,226,541 - SM_b20991 0.88 +1.9
1,226,545 + SM_b20991 0.89 -1.8
1,226,545 + SM_b20991 0.89 +0.1
1,226,545 + SM_b20991 0.89 +0.0
1,226,546 - SM_b20991 0.89 +0.1
1,226,546 - SM_b20991 0.89 -0.4
1,226,711 + +0.1
1,226,712 - -0.1
1,226,781 - +0.4
1,226,781 - -1.1
1,226,839 + -0.6
1,226,839 + -0.7
1,226,840 - -0.9
1,226,883 + -0.3
1,226,901 - -0.3
1,226,923 + +0.0
1,226,923 + -0.6
1,226,924 - -0.5
1,227,028 + SM_b20992 0.13 -1.2
1,227,094 - SM_b20992 0.18 -0.4
1,227,299 + SM_b20992 0.32 +0.1
1,227,299 + SM_b20992 0.32 -0.5
1,227,516 + SM_b20992 0.48 -1.2
1,227,666 + SM_b20992 0.58 -1.1

Or see this region's nucleotide sequence