Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20933

Experiment: Myristic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20932 and SM_b20933 are separated by 179 nucleotidesSM_b20933 and SM_b20934 overlap by 4 nucleotidesSM_b20934 and SM_b20935 overlap by 62 nucleotidesSM_b20935 and SM_b20936 are separated by 221 nucleotides SM_b20932: SM_b20932 - endo-1,3-1,4-beta-glycanase, C-terminal secretion signal protein, at 1,156,120 to 1,157,517 _b20932 SM_b20933: SM_b20933 - two-component sensor histidine kinase, at 1,157,697 to 1,160,420 _b20933 SM_b20934: SM_b20934 - two-component response regulator protein, at 1,160,417 to 1,160,953 _b20934 SM_b20935: SM_b20935 - transcriptional regulator, at 1,160,892 to 1,161,143 _b20935 SM_b20936: SM_b20936 - hypothetical protein, at 1,161,365 to 1,161,952 _b20936 Position (kb) 1157 1158 1159 1160 1161Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1156.718 kb on + strand, within SM_b20932at 1156.731 kb on + strand, within SM_b20932at 1156.732 kb on - strand, within SM_b20932at 1156.732 kb on - strand, within SM_b20932at 1156.733 kb on + strand, within SM_b20932at 1156.733 kb on + strand, within SM_b20932at 1156.734 kb on - strand, within SM_b20932at 1156.734 kb on - strand, within SM_b20932at 1156.752 kb on + strand, within SM_b20932at 1156.815 kb on + strand, within SM_b20932at 1156.933 kb on + strandat 1157.039 kb on - strand, within SM_b20932at 1157.051 kb on + strand, within SM_b20932at 1157.179 kb on + strand, within SM_b20932at 1157.179 kb on + strand, within SM_b20932at 1157.179 kb on + strand, within SM_b20932at 1157.180 kb on - strand, within SM_b20932at 1157.180 kb on - strand, within SM_b20932at 1157.261 kb on + strand, within SM_b20932at 1157.261 kb on + strand, within SM_b20932at 1157.261 kb on + strand, within SM_b20932at 1157.261 kb on + strand, within SM_b20932at 1157.261 kb on + strand, within SM_b20932at 1157.261 kb on + strand, within SM_b20932at 1157.262 kb on - strand, within SM_b20932at 1157.262 kb on - strand, within SM_b20932at 1157.278 kb on + strand, within SM_b20932at 1157.278 kb on + strand, within SM_b20932at 1157.309 kb on + strand, within SM_b20932at 1157.330 kb on + strand, within SM_b20932at 1157.330 kb on + strand, within SM_b20932at 1157.336 kb on + strand, within SM_b20932at 1157.336 kb on + strand, within SM_b20932at 1157.336 kb on + strand, within SM_b20932at 1157.337 kb on - strand, within SM_b20932at 1157.337 kb on - strand, within SM_b20932at 1157.339 kb on + strand, within SM_b20932at 1157.339 kb on + strand, within SM_b20932at 1157.339 kb on + strand, within SM_b20932at 1157.340 kb on - strand, within SM_b20932at 1157.340 kb on - strand, within SM_b20932at 1157.340 kb on - strand, within SM_b20932at 1157.355 kb on + strand, within SM_b20932at 1157.474 kb on + strandat 1157.475 kb on - strandat 1157.477 kb on + strandat 1157.591 kb on + strandat 1157.610 kb on - strandat 1157.610 kb on - strandat 1157.610 kb on - strandat 1157.764 kb on - strandat 1157.800 kb on - strandat 1157.829 kb on + strandat 1157.830 kb on - strandat 1158.122 kb on + strand, within SM_b20933at 1158.287 kb on - strand, within SM_b20933at 1158.534 kb on + strand, within SM_b20933at 1158.534 kb on + strand, within SM_b20933at 1158.535 kb on - strand, within SM_b20933at 1158.535 kb on - strand, within SM_b20933at 1158.572 kb on - strand, within SM_b20933at 1158.582 kb on + strand, within SM_b20933at 1158.583 kb on - strand, within SM_b20933at 1158.700 kb on - strand, within SM_b20933at 1158.814 kb on + strand, within SM_b20933at 1158.814 kb on + strand, within SM_b20933at 1158.814 kb on + strand, within SM_b20933at 1158.815 kb on - strand, within SM_b20933at 1158.815 kb on - strand, within SM_b20933at 1158.815 kb on - strand, within SM_b20933at 1158.815 kb on - strand, within SM_b20933at 1158.815 kb on - strand, within SM_b20933at 1158.891 kb on + strand, within SM_b20933at 1158.891 kb on + strand, within SM_b20933at 1158.891 kb on + strand, within SM_b20933at 1158.892 kb on - strand, within SM_b20933at 1158.892 kb on - strand, within SM_b20933at 1158.892 kb on - strand, within SM_b20933at 1158.892 kb on - strand, within SM_b20933at 1158.895 kb on - strand, within SM_b20933at 1158.990 kb on + strand, within SM_b20933at 1158.991 kb on - strand, within SM_b20933at 1159.137 kb on - strand, within SM_b20933at 1159.137 kb on - strand, within SM_b20933at 1159.146 kb on + strand, within SM_b20933at 1159.147 kb on - strand, within SM_b20933at 1159.147 kb on - strand, within SM_b20933at 1159.267 kb on + strand, within SM_b20933at 1159.343 kb on + strand, within SM_b20933at 1159.343 kb on + strand, within SM_b20933at 1159.343 kb on + strand, within SM_b20933at 1159.344 kb on - strand, within SM_b20933at 1159.493 kb on + strand, within SM_b20933at 1159.494 kb on - strand, within SM_b20933at 1159.494 kb on - strand, within SM_b20933at 1159.494 kb on - strand, within SM_b20933at 1159.566 kb on - strand, within SM_b20933at 1159.566 kb on - strand, within SM_b20933at 1159.615 kb on + strand, within SM_b20933at 1159.615 kb on + strand, within SM_b20933at 1159.681 kb on - strand, within SM_b20933at 1159.681 kb on - strand, within SM_b20933at 1159.681 kb on - strand, within SM_b20933at 1159.958 kb on - strand, within SM_b20933at 1159.958 kb on - strand, within SM_b20933at 1159.979 kb on + strand, within SM_b20933at 1160.288 kb on + strandat 1160.288 kb on + strandat 1160.288 kb on + strandat 1160.288 kb on + strandat 1160.289 kb on - strandat 1160.377 kb on + strandat 1160.377 kb on + strandat 1160.377 kb on + strandat 1160.378 kb on - strandat 1160.581 kb on + strand, within SM_b20934at 1160.582 kb on - strand, within SM_b20934at 1160.672 kb on + strand, within SM_b20934at 1160.675 kb on - strand, within SM_b20934at 1160.675 kb on - strand, within SM_b20934at 1160.772 kb on + strand, within SM_b20934at 1160.809 kb on + strand, within SM_b20934at 1160.814 kb on + strand, within SM_b20934at 1160.814 kb on + strand, within SM_b20934at 1160.815 kb on - strand, within SM_b20934at 1160.878 kb on + strand, within SM_b20934at 1160.879 kb on - strand, within SM_b20934at 1160.931 kb on + strandat 1161.044 kb on - strand, within SM_b20935at 1161.044 kb on - strand, within SM_b20935at 1161.137 kb on + strandat 1161.143 kb on + strandat 1161.143 kb on + strandat 1161.143 kb on + strandat 1161.143 kb on + strandat 1161.143 kb on + strandat 1161.144 kb on - strandat 1161.144 kb on - strandat 1161.144 kb on - strandat 1161.144 kb on - strandat 1161.144 kb on - strandat 1161.144 kb on - strandat 1161.144 kb on - strandat 1161.144 kb on - strandat 1161.144 kb on - strandat 1161.326 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Myristic (C)
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1,156,718 + SM_b20932 0.43 +0.4
1,156,731 + SM_b20932 0.44 -1.4
1,156,732 - SM_b20932 0.44 -0.1
1,156,732 - SM_b20932 0.44 +0.1
1,156,733 + SM_b20932 0.44 -0.3
1,156,733 + SM_b20932 0.44 +0.1
1,156,734 - SM_b20932 0.44 +0.6
1,156,734 - SM_b20932 0.44 +0.6
1,156,752 + SM_b20932 0.45 +0.1
1,156,815 + SM_b20932 0.50 -1.3
1,156,933 + -0.2
1,157,039 - SM_b20932 0.66 +2.0
1,157,051 + SM_b20932 0.67 +0.5
1,157,179 + SM_b20932 0.76 +0.7
1,157,179 + SM_b20932 0.76 +0.1
1,157,179 + SM_b20932 0.76 -0.2
1,157,180 - SM_b20932 0.76 -0.0
1,157,180 - SM_b20932 0.76 +0.1
1,157,261 + SM_b20932 0.82 -1.0
1,157,261 + SM_b20932 0.82 -0.7
1,157,261 + SM_b20932 0.82 -0.2
1,157,261 + SM_b20932 0.82 +0.4
1,157,261 + SM_b20932 0.82 -0.1
1,157,261 + SM_b20932 0.82 -0.0
1,157,262 - SM_b20932 0.82 +0.1
1,157,262 - SM_b20932 0.82 +0.2
1,157,278 + SM_b20932 0.83 -0.9
1,157,278 + SM_b20932 0.83 -0.4
1,157,309 + SM_b20932 0.85 -0.5
1,157,330 + SM_b20932 0.87 -0.6
1,157,330 + SM_b20932 0.87 -1.8
1,157,336 + SM_b20932 0.87 -1.1
1,157,336 + SM_b20932 0.87 -2.1
1,157,336 + SM_b20932 0.87 -2.1
1,157,337 - SM_b20932 0.87 -0.6
1,157,337 - SM_b20932 0.87 -0.3
1,157,339 + SM_b20932 0.87 +0.0
1,157,339 + SM_b20932 0.87 +0.5
1,157,339 + SM_b20932 0.87 -0.9
1,157,340 - SM_b20932 0.87 +0.7
1,157,340 - SM_b20932 0.87 +0.1
1,157,340 - SM_b20932 0.87 -0.4
1,157,355 + SM_b20932 0.88 -0.8
1,157,474 + -0.9
1,157,475 - +1.4
1,157,477 + +0.5
1,157,591 + +0.8
1,157,610 - +0.6
1,157,610 - +1.2
1,157,610 - +1.1
1,157,764 - +0.2
1,157,800 - +3.6
1,157,829 + +0.8
1,157,830 - +0.5
1,158,122 + SM_b20933 0.16 +0.8
1,158,287 - SM_b20933 0.22 +0.7
1,158,534 + SM_b20933 0.31 +1.0
1,158,534 + SM_b20933 0.31 +0.4
1,158,535 - SM_b20933 0.31 +0.3
1,158,535 - SM_b20933 0.31 +0.7
1,158,572 - SM_b20933 0.32 +0.2
1,158,582 + SM_b20933 0.32 +0.2
1,158,583 - SM_b20933 0.33 +0.5
1,158,700 - SM_b20933 0.37 +1.0
1,158,814 + SM_b20933 0.41 -0.6
1,158,814 + SM_b20933 0.41 +0.8
1,158,814 + SM_b20933 0.41 +1.0
1,158,815 - SM_b20933 0.41 +0.6
1,158,815 - SM_b20933 0.41 +0.5
1,158,815 - SM_b20933 0.41 +0.3
1,158,815 - SM_b20933 0.41 +0.9
1,158,815 - SM_b20933 0.41 -0.5
1,158,891 + SM_b20933 0.44 +0.5
1,158,891 + SM_b20933 0.44 +0.6
1,158,891 + SM_b20933 0.44 +1.7
1,158,892 - SM_b20933 0.44 +2.1
1,158,892 - SM_b20933 0.44 +0.8
1,158,892 - SM_b20933 0.44 +0.4
1,158,892 - SM_b20933 0.44 +0.2
1,158,895 - SM_b20933 0.44 +0.7
1,158,990 + SM_b20933 0.47 +1.2
1,158,991 - SM_b20933 0.48 +1.2
1,159,137 - SM_b20933 0.53 +0.5
1,159,137 - SM_b20933 0.53 +0.7
1,159,146 + SM_b20933 0.53 +0.4
1,159,147 - SM_b20933 0.53 +1.3
1,159,147 - SM_b20933 0.53 +0.2
1,159,267 + SM_b20933 0.58 -3.4
1,159,343 + SM_b20933 0.60 -0.9
1,159,343 + SM_b20933 0.60 +0.2
1,159,343 + SM_b20933 0.60 +0.2
1,159,344 - SM_b20933 0.60 +1.0
1,159,493 + SM_b20933 0.66 +1.1
1,159,494 - SM_b20933 0.66 +0.8
1,159,494 - SM_b20933 0.66 -0.1
1,159,494 - SM_b20933 0.66 -1.2
1,159,566 - SM_b20933 0.69 +1.1
1,159,566 - SM_b20933 0.69 +0.9
1,159,615 + SM_b20933 0.70 +1.7
1,159,615 + SM_b20933 0.70 +1.8
1,159,681 - SM_b20933 0.73 +0.3
1,159,681 - SM_b20933 0.73 +0.7
1,159,681 - SM_b20933 0.73 +0.5
1,159,958 - SM_b20933 0.83 +1.1
1,159,958 - SM_b20933 0.83 +0.1
1,159,979 + SM_b20933 0.84 +1.1
1,160,288 + +0.7
1,160,288 + +0.5
1,160,288 + +0.7
1,160,288 + +1.2
1,160,289 - +0.0
1,160,377 + +0.5
1,160,377 + +0.3
1,160,377 + -1.6
1,160,378 - +0.2
1,160,581 + SM_b20934 0.31 -0.1
1,160,582 - SM_b20934 0.31 +0.4
1,160,672 + SM_b20934 0.47 -0.2
1,160,675 - SM_b20934 0.48 +0.1
1,160,675 - SM_b20934 0.48 +0.1
1,160,772 + SM_b20934 0.66 +0.1
1,160,809 + SM_b20934 0.73 -1.0
1,160,814 + SM_b20934 0.74 -0.4
1,160,814 + SM_b20934 0.74 -0.4
1,160,815 - SM_b20934 0.74 -0.0
1,160,878 + SM_b20934 0.86 -0.4
1,160,879 - SM_b20934 0.86 -0.7
1,160,931 + -0.8
1,161,044 - SM_b20935 0.60 -0.6
1,161,044 - SM_b20935 0.60 -0.4
1,161,137 + +0.8
1,161,143 + -0.9
1,161,143 + -0.3
1,161,143 + -0.7
1,161,143 + -0.5
1,161,143 + -0.1
1,161,144 - -0.6
1,161,144 - +0.1
1,161,144 - +0.5
1,161,144 - -0.3
1,161,144 - +0.5
1,161,144 - +0.4
1,161,144 - -0.3
1,161,144 - -0.3
1,161,144 - +0.1
1,161,326 - -0.1

Or see this region's nucleotide sequence