Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20469

Experiment: Myristic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20467 and SM_b20468 overlap by 4 nucleotidesSM_b20468 and SM_b20469 are separated by 29 nucleotidesSM_b20469 and SM_b20470 are separated by 668 nucleotides SM_b20467: SM_b20467 - sensor kinase, at 479,716 to 481,539 _b20467 SM_b20468: SM_b20468 - sensory transduction DNA-binding response regulator protein, at 481,536 to 482,180 _b20468 SM_b20469: SM_b20469 - hypothetical protein, at 482,210 to 483,286 _b20469 SM_b20470: SM_b20470 - hypothetical protein, at 483,955 to 484,386 _b20470 Position (kb) 482 483 484Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 481.211 kb on + strand, within SM_b20467at 481.211 kb on + strand, within SM_b20467at 481.212 kb on - strand, within SM_b20467at 481.212 kb on - strand, within SM_b20467at 481.212 kb on - strand, within SM_b20467at 481.214 kb on - strand, within SM_b20467at 481.214 kb on - strand, within SM_b20467at 481.263 kb on + strand, within SM_b20467at 481.263 kb on + strand, within SM_b20467at 481.263 kb on + strand, within SM_b20467at 481.263 kb on + strand, within SM_b20467at 481.263 kb on + strand, within SM_b20467at 481.264 kb on - strand, within SM_b20467at 481.264 kb on - strand, within SM_b20467at 481.269 kb on - strand, within SM_b20467at 481.346 kb on + strand, within SM_b20467at 481.346 kb on + strand, within SM_b20467at 481.346 kb on + strand, within SM_b20467at 481.484 kb on + strandat 481.573 kb on + strandat 481.702 kb on + strand, within SM_b20468at 481.702 kb on + strand, within SM_b20468at 481.703 kb on - strand, within SM_b20468at 481.703 kb on - strand, within SM_b20468at 481.703 kb on - strand, within SM_b20468at 481.703 kb on - strand, within SM_b20468at 481.733 kb on + strand, within SM_b20468at 481.819 kb on + strand, within SM_b20468at 481.908 kb on + strand, within SM_b20468at 481.909 kb on - strand, within SM_b20468at 481.928 kb on - strand, within SM_b20468at 482.107 kb on - strand, within SM_b20468at 482.107 kb on - strand, within SM_b20468at 482.148 kb on - strandat 482.319 kb on + strand, within SM_b20469at 482.319 kb on + strand, within SM_b20469at 482.319 kb on + strand, within SM_b20469at 482.320 kb on - strand, within SM_b20469at 482.320 kb on - strand, within SM_b20469at 482.320 kb on - strand, within SM_b20469at 482.329 kb on + strand, within SM_b20469at 482.330 kb on - strand, within SM_b20469at 482.330 kb on - strand, within SM_b20469at 482.330 kb on - strand, within SM_b20469at 482.475 kb on + strand, within SM_b20469at 482.475 kb on + strand, within SM_b20469at 482.475 kb on + strand, within SM_b20469at 482.476 kb on - strand, within SM_b20469at 482.476 kb on - strand, within SM_b20469at 482.485 kb on + strand, within SM_b20469at 482.485 kb on + strand, within SM_b20469at 482.485 kb on + strand, within SM_b20469at 482.671 kb on + strand, within SM_b20469at 482.671 kb on + strand, within SM_b20469at 482.733 kb on + strand, within SM_b20469at 482.733 kb on + strand, within SM_b20469at 482.733 kb on + strand, within SM_b20469at 482.733 kb on + strand, within SM_b20469at 482.734 kb on - strand, within SM_b20469at 482.776 kb on + strand, within SM_b20469at 482.776 kb on + strand, within SM_b20469at 482.777 kb on - strand, within SM_b20469at 483.025 kb on - strand, within SM_b20469at 483.026 kb on + strand, within SM_b20469at 483.026 kb on + strand, within SM_b20469at 483.026 kb on + strand, within SM_b20469at 483.027 kb on - strand, within SM_b20469at 483.027 kb on - strand, within SM_b20469at 483.027 kb on - strand, within SM_b20469at 483.027 kb on - strand, within SM_b20469at 483.040 kb on + strand, within SM_b20469at 483.064 kb on + strand, within SM_b20469at 483.064 kb on + strand, within SM_b20469at 483.065 kb on - strand, within SM_b20469at 483.066 kb on + strandat 483.331 kb on + strandat 483.332 kb on - strandat 483.372 kb on - strandat 483.387 kb on - strandat 483.393 kb on - strandat 483.393 kb on - strandat 483.414 kb on + strandat 483.453 kb on + strandat 483.454 kb on - strandat 483.468 kb on + strandat 483.479 kb on + strandat 483.479 kb on + strandat 483.480 kb on - strandat 483.509 kb on + strandat 483.546 kb on + strandat 483.546 kb on + strandat 483.626 kb on + strandat 483.709 kb on + strandat 483.823 kb on - strandat 483.823 kb on - strandat 483.852 kb on + strandat 484.023 kb on + strand, within SM_b20470at 484.024 kb on - strand, within SM_b20470at 484.047 kb on + strand, within SM_b20470at 484.083 kb on - strand, within SM_b20470at 484.193 kb on + strand, within SM_b20470at 484.193 kb on + strand, within SM_b20470at 484.194 kb on - strand, within SM_b20470at 484.194 kb on - strand, within SM_b20470at 484.194 kb on - strand, within SM_b20470at 484.198 kb on - strand, within SM_b20470at 484.198 kb on - strand, within SM_b20470at 484.198 kb on - strand, within SM_b20470at 484.198 kb on - strand, within SM_b20470at 484.198 kb on - strand, within SM_b20470at 484.237 kb on + strand, within SM_b20470at 484.238 kb on - strand, within SM_b20470at 484.238 kb on - strand, within SM_b20470at 484.257 kb on + strand, within SM_b20470

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Per-strain Table

Position Strand Gene LocusTag Fraction Myristic (C)
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481,211 + SM_b20467 0.82 -0.4
481,211 + SM_b20467 0.82 -0.3
481,212 - SM_b20467 0.82 -0.3
481,212 - SM_b20467 0.82 -0.5
481,212 - SM_b20467 0.82 +0.5
481,214 - SM_b20467 0.82 -0.8
481,214 - SM_b20467 0.82 -0.9
481,263 + SM_b20467 0.85 -0.4
481,263 + SM_b20467 0.85 -0.3
481,263 + SM_b20467 0.85 +0.2
481,263 + SM_b20467 0.85 +0.4
481,263 + SM_b20467 0.85 +0.1
481,264 - SM_b20467 0.85 -0.6
481,264 - SM_b20467 0.85 -1.2
481,269 - SM_b20467 0.85 +0.4
481,346 + SM_b20467 0.89 -0.6
481,346 + SM_b20467 0.89 +1.9
481,346 + SM_b20467 0.89 -0.0
481,484 + -0.1
481,573 + +0.0
481,702 + SM_b20468 0.26 -1.2
481,702 + SM_b20468 0.26 +0.2
481,703 - SM_b20468 0.26 -0.9
481,703 - SM_b20468 0.26 -1.8
481,703 - SM_b20468 0.26 -0.6
481,703 - SM_b20468 0.26 -0.5
481,733 + SM_b20468 0.31 +0.0
481,819 + SM_b20468 0.44 +0.1
481,908 + SM_b20468 0.58 -0.7
481,909 - SM_b20468 0.58 -0.4
481,928 - SM_b20468 0.61 -0.4
482,107 - SM_b20468 0.89 -0.4
482,107 - SM_b20468 0.89 -0.8
482,148 - -0.2
482,319 + SM_b20469 0.10 +0.1
482,319 + SM_b20469 0.10 +0.1
482,319 + SM_b20469 0.10 +0.1
482,320 - SM_b20469 0.10 -2.7
482,320 - SM_b20469 0.10 +0.7
482,320 - SM_b20469 0.10 +1.6
482,329 + SM_b20469 0.11 -0.2
482,330 - SM_b20469 0.11 -0.2
482,330 - SM_b20469 0.11 -0.9
482,330 - SM_b20469 0.11 -0.2
482,475 + SM_b20469 0.25 +0.3
482,475 + SM_b20469 0.25 +0.3
482,475 + SM_b20469 0.25 -0.0
482,476 - SM_b20469 0.25 +0.9
482,476 - SM_b20469 0.25 +0.4
482,485 + SM_b20469 0.26 -5.4
482,485 + SM_b20469 0.26 +1.9
482,485 + SM_b20469 0.26 -0.7
482,671 + SM_b20469 0.43 -0.2
482,671 + SM_b20469 0.43 +0.3
482,733 + SM_b20469 0.49 +0.3
482,733 + SM_b20469 0.49 +1.2
482,733 + SM_b20469 0.49 +0.0
482,733 + SM_b20469 0.49 +1.1
482,734 - SM_b20469 0.49 -0.9
482,776 + SM_b20469 0.53 +0.0
482,776 + SM_b20469 0.53 -0.4
482,777 - SM_b20469 0.53 -1.8
483,025 - SM_b20469 0.76 -0.6
483,026 + SM_b20469 0.76 -0.1
483,026 + SM_b20469 0.76 +0.0
483,026 + SM_b20469 0.76 -0.2
483,027 - SM_b20469 0.76 -0.3
483,027 - SM_b20469 0.76 +0.0
483,027 - SM_b20469 0.76 -0.2
483,027 - SM_b20469 0.76 -0.4
483,040 + SM_b20469 0.77 -0.8
483,064 + SM_b20469 0.79 -2.5
483,064 + SM_b20469 0.79 -0.4
483,065 - SM_b20469 0.79 -0.0
483,066 + +1.0
483,331 + +0.5
483,332 - -0.3
483,372 - -1.6
483,387 - -0.4
483,393 - +1.0
483,393 - +0.5
483,414 + +0.1
483,453 + -0.0
483,454 - +0.1
483,468 + +0.1
483,479 + -0.1
483,479 + -0.5
483,480 - -5.3
483,509 + -0.5
483,546 + -0.2
483,546 + +0.2
483,626 + -0.2
483,709 + -0.1
483,823 - -0.4
483,823 - -0.8
483,852 + -0.2
484,023 + SM_b20470 0.16 +0.5
484,024 - SM_b20470 0.16 -0.2
484,047 + SM_b20470 0.21 +0.5
484,083 - SM_b20470 0.30 +0.4
484,193 + SM_b20470 0.55 +0.6
484,193 + SM_b20470 0.55 +0.1
484,194 - SM_b20470 0.55 +0.5
484,194 - SM_b20470 0.55 -0.2
484,194 - SM_b20470 0.55 +0.0
484,198 - SM_b20470 0.56 -1.3
484,198 - SM_b20470 0.56 +0.5
484,198 - SM_b20470 0.56 -0.5
484,198 - SM_b20470 0.56 +0.2
484,198 - SM_b20470 0.56 -0.1
484,237 + SM_b20470 0.65 -0.2
484,238 - SM_b20470 0.66 +0.5
484,238 - SM_b20470 0.66 +1.4
484,257 + SM_b20470 0.70 -2.0

Or see this region's nucleotide sequence