Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS25750 and RS_RS16215 are separated by 14 nucleotides RS_RS16215 and RS_RS16220 are separated by 10 nucleotides RS_RS16220 and RS_RS16225 are separated by 254 nucleotides RS_RS16225 and RS_RS16230 are separated by 49 nucleotides
RS_RS25750: RS_RS25750 - hypothetical protein, at 3,493,903 to 3,494,436
_RS25750
RS_RS16215: RS_RS16215 - hypothetical protein, at 3,494,451 to 3,494,933
_RS16215
RS_RS16220: RS_RS16220 - hypothetical protein, at 3,494,944 to 3,495,180
_RS16220
RS_RS16225: RS_RS16225 - helix-turn-helix domain-containing protein, at 3,495,435 to 3,495,896
_RS16225
RS_RS16230: RS_RS16230 - hypothetical protein, at 3,495,946 to 3,498,183
_RS16230
Position (kb) 3494
3495
3496 Strain fitness (log2 ratio) -1
0
1 at 3493.961 kb on + strand, within RS_RS25750 at 3494.003 kb on + strand, within RS_RS25750 at 3494.003 kb on + strand, within RS_RS25750 at 3494.249 kb on + strand, within RS_RS25750 at 3494.369 kb on + strand, within RS_RS25750 at 3494.588 kb on + strand, within RS_RS16215 at 3494.588 kb on + strand, within RS_RS16215 at 3494.590 kb on + strand, within RS_RS16215 at 3494.590 kb on + strand, within RS_RS16215 at 3494.590 kb on + strand, within RS_RS16215 at 3494.738 kb on + strand, within RS_RS16215 at 3494.951 kb on + strand at 3495.017 kb on + strand, within RS_RS16220 at 3495.017 kb on + strand, within RS_RS16220 at 3495.237 kb on + strand at 3495.237 kb on + strand at 3495.237 kb on + strand at 3495.237 kb on + strand at 3495.344 kb on + strand at 3495.344 kb on + strand at 3495.345 kb on - strand at 3495.813 kb on + strand, within RS_RS16225
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days remove 3,493,961 + RS_RS25750 0.11 +1.4 3,494,003 + RS_RS25750 0.19 +0.0 3,494,003 + RS_RS25750 0.19 -0.6 3,494,249 + RS_RS25750 0.65 +0.4 3,494,369 + RS_RS25750 0.87 -0.0 3,494,588 + RS_RS16215 0.28 -0.1 3,494,588 + RS_RS16215 0.28 -0.0 3,494,590 + RS_RS16215 0.29 -0.6 3,494,590 + RS_RS16215 0.29 -0.1 3,494,590 + RS_RS16215 0.29 -0.3 3,494,738 + RS_RS16215 0.59 +0.1 3,494,951 + +0.1 3,495,017 + RS_RS16220 0.31 +1.2 3,495,017 + RS_RS16220 0.31 -0.1 3,495,237 + +0.4 3,495,237 + -0.5 3,495,237 + +0.2 3,495,237 + +0.7 3,495,344 + -0.8 3,495,344 + -0.3 3,495,345 - -0.1 3,495,813 + RS_RS16225 0.82 +0.1
Or see this region's nucleotide sequence