Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS03080 and RS_RS03085 are separated by 65 nucleotides RS_RS03085 and RS_RS03090 are separated by 323 nucleotides
RS_RS03080: RS_RS03080 - EamA/RhaT family transporter, at 660,934 to 661,947
_RS03080
RS_RS03085: RS_RS03085 - LysR family transcriptional regulator, at 662,013 to 662,882
_RS03085
RS_RS03090: RS_RS03090 - hypothetical protein, at 663,206 to 663,718
_RS03090
Position (kb) 662
663 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 661.154 kb on + strand, within RS_RS03080 at 661.154 kb on + strand, within RS_RS03080 at 661.154 kb on + strand, within RS_RS03080 at 661.154 kb on + strand, within RS_RS03080 at 661.154 kb on + strand, within RS_RS03080 at 661.155 kb on - strand, within RS_RS03080 at 661.155 kb on - strand, within RS_RS03080 at 661.155 kb on - strand, within RS_RS03080 at 661.155 kb on - strand, within RS_RS03080 at 661.155 kb on - strand, within RS_RS03080 at 661.155 kb on - strand, within RS_RS03080 at 661.167 kb on - strand, within RS_RS03080 at 661.167 kb on - strand, within RS_RS03080 at 661.183 kb on + strand, within RS_RS03080 at 661.183 kb on + strand, within RS_RS03080 at 661.183 kb on + strand, within RS_RS03080 at 661.183 kb on + strand, within RS_RS03080 at 661.183 kb on + strand, within RS_RS03080 at 661.183 kb on + strand, within RS_RS03080 at 661.384 kb on + strand, within RS_RS03080 at 661.534 kb on + strand, within RS_RS03080 at 661.885 kb on + strand at 661.886 kb on - strand at 661.886 kb on - strand at 661.920 kb on + strand at 661.921 kb on - strand at 661.939 kb on + strand at 661.939 kb on + strand at 662.322 kb on + strand, within RS_RS03085 at 662.334 kb on + strand, within RS_RS03085 at 662.569 kb on - strand, within RS_RS03085 at 662.632 kb on - strand, within RS_RS03085 at 662.644 kb on - strand, within RS_RS03085 at 663.035 kb on + strand at 663.036 kb on - strand at 663.309 kb on + strand, within RS_RS03090 at 663.310 kb on - strand, within RS_RS03090 at 663.310 kb on - strand, within RS_RS03090 at 663.496 kb on - strand, within RS_RS03090 at 663.510 kb on + strand, within RS_RS03090 at 663.564 kb on + strand, within RS_RS03090 at 663.564 kb on + strand, within RS_RS03090 at 663.565 kb on - strand, within RS_RS03090
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days remove 661,154 + RS_RS03080 0.22 +2.1 661,154 + RS_RS03080 0.22 -0.5 661,154 + RS_RS03080 0.22 -0.2 661,154 + RS_RS03080 0.22 -0.2 661,154 + RS_RS03080 0.22 +0.1 661,155 - RS_RS03080 0.22 +0.5 661,155 - RS_RS03080 0.22 +0.4 661,155 - RS_RS03080 0.22 -0.9 661,155 - RS_RS03080 0.22 +0.3 661,155 - RS_RS03080 0.22 +0.9 661,155 - RS_RS03080 0.22 +0.7 661,167 - RS_RS03080 0.23 -1.7 661,167 - RS_RS03080 0.23 +0.6 661,183 + RS_RS03080 0.25 +0.3 661,183 + RS_RS03080 0.25 -0.1 661,183 + RS_RS03080 0.25 -0.1 661,183 + RS_RS03080 0.25 +0.6 661,183 + RS_RS03080 0.25 +0.5 661,183 + RS_RS03080 0.25 -0.0 661,384 + RS_RS03080 0.44 +0.6 661,534 + RS_RS03080 0.59 +1.1 661,885 + -0.5 661,886 - +0.2 661,886 - +0.2 661,920 + +0.7 661,921 - +0.4 661,939 + -1.3 661,939 + +0.4 662,322 + RS_RS03085 0.36 -0.1 662,334 + RS_RS03085 0.37 -3.0 662,569 - RS_RS03085 0.64 -0.7 662,632 - RS_RS03085 0.71 -0.4 662,644 - RS_RS03085 0.73 +0.4 663,035 + +0.9 663,036 - +0.2 663,309 + RS_RS03090 0.20 -0.3 663,310 - RS_RS03090 0.20 -0.1 663,310 - RS_RS03090 0.20 +0.0 663,496 - RS_RS03090 0.57 +0.0 663,510 + RS_RS03090 0.59 +0.3 663,564 + RS_RS03090 0.70 +0.3 663,564 + RS_RS03090 0.70 +0.1 663,565 - RS_RS03090 0.70 +0.6
Or see this region's nucleotide sequence