Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4769

Experiment: KB with Solanesol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4768 and Psyr_4769 are separated by 9 nucleotidesPsyr_4769 and Psyr_4770 are separated by 250 nucleotides Psyr_4768: Psyr_4768 - conserved hypothetical protein, at 5,643,834 to 5,645,159 _4768 Psyr_4769: Psyr_4769 - Major facilitator superfamily, at 5,645,169 to 5,646,581 _4769 Psyr_4770: Psyr_4770 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s), at 5,646,832 to 5,649,525 _4770 Position (kb) 5645 5646 5647Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5644.257 kb on + strand, within Psyr_4768at 5644.383 kb on + strand, within Psyr_4768at 5644.383 kb on + strand, within Psyr_4768at 5644.383 kb on + strand, within Psyr_4768at 5644.492 kb on - strand, within Psyr_4768at 5644.500 kb on + strand, within Psyr_4768at 5644.501 kb on - strand, within Psyr_4768at 5644.602 kb on + strand, within Psyr_4768at 5644.603 kb on - strand, within Psyr_4768at 5644.603 kb on - strand, within Psyr_4768at 5644.767 kb on + strand, within Psyr_4768at 5644.820 kb on + strand, within Psyr_4768at 5644.821 kb on - strand, within Psyr_4768at 5644.821 kb on - strand, within Psyr_4768at 5644.878 kb on + strand, within Psyr_4768at 5644.878 kb on + strand, within Psyr_4768at 5644.878 kb on + strand, within Psyr_4768at 5644.878 kb on + strand, within Psyr_4768at 5644.879 kb on - strand, within Psyr_4768at 5644.879 kb on - strand, within Psyr_4768at 5645.020 kb on - strand, within Psyr_4768at 5645.084 kb on + strandat 5645.085 kb on - strandat 5645.088 kb on + strandat 5645.088 kb on + strandat 5645.088 kb on + strandat 5645.088 kb on + strandat 5645.088 kb on + strandat 5645.088 kb on + strandat 5645.089 kb on - strandat 5645.089 kb on - strandat 5645.089 kb on - strandat 5645.089 kb on - strandat 5645.089 kb on - strandat 5645.089 kb on - strandat 5645.113 kb on + strandat 5645.113 kb on + strandat 5645.155 kb on + strandat 5645.156 kb on - strandat 5645.156 kb on - strandat 5645.156 kb on - strandat 5645.157 kb on + strandat 5645.157 kb on + strandat 5645.157 kb on + strandat 5645.158 kb on - strandat 5645.168 kb on + strandat 5645.169 kb on - strandat 5645.346 kb on + strand, within Psyr_4769at 5645.347 kb on - strand, within Psyr_4769at 5645.347 kb on - strand, within Psyr_4769at 5645.347 kb on - strand, within Psyr_4769at 5645.347 kb on - strand, within Psyr_4769at 5645.555 kb on - strand, within Psyr_4769at 5645.600 kb on + strand, within Psyr_4769at 5645.664 kb on + strand, within Psyr_4769at 5645.665 kb on - strand, within Psyr_4769at 5645.665 kb on - strand, within Psyr_4769at 5645.722 kb on - strand, within Psyr_4769at 5645.722 kb on - strand, within Psyr_4769at 5645.722 kb on - strand, within Psyr_4769at 5645.813 kb on - strand, within Psyr_4769at 5645.873 kb on - strand, within Psyr_4769at 5645.911 kb on - strand, within Psyr_4769at 5645.987 kb on + strand, within Psyr_4769at 5646.246 kb on + strand, within Psyr_4769at 5646.314 kb on + strand, within Psyr_4769at 5646.314 kb on + strand, within Psyr_4769at 5646.449 kb on - strandat 5646.449 kb on - strandat 5646.533 kb on + strandat 5646.533 kb on + strandat 5646.533 kb on + strandat 5646.534 kb on - strandat 5646.534 kb on - strandat 5646.681 kb on + strandat 5646.682 kb on - strandat 5646.716 kb on + strandat 5646.717 kb on - strandat 5646.718 kb on + strandat 5646.718 kb on + strandat 5646.719 kb on - strandat 5646.724 kb on + strandat 5646.744 kb on + strandat 5646.744 kb on + strandat 5646.744 kb on + strandat 5646.744 kb on + strandat 5646.745 kb on - strandat 5646.745 kb on - strandat 5646.745 kb on - strandat 5646.792 kb on + strandat 5646.807 kb on + strandat 5646.808 kb on - strandat 5646.811 kb on - strandat 5646.859 kb on - strandat 5646.875 kb on + strandat 5646.875 kb on + strandat 5647.027 kb on + strandat 5647.106 kb on - strand, within Psyr_4770at 5647.118 kb on - strand, within Psyr_4770at 5647.118 kb on - strand, within Psyr_4770at 5647.171 kb on + strand, within Psyr_4770at 5647.171 kb on + strand, within Psyr_4770at 5647.172 kb on - strand, within Psyr_4770at 5647.172 kb on - strandat 5647.196 kb on + strand, within Psyr_4770at 5647.196 kb on + strand, within Psyr_4770at 5647.197 kb on - strand, within Psyr_4770at 5647.197 kb on - strand, within Psyr_4770at 5647.197 kb on - strand, within Psyr_4770at 5647.390 kb on + strand, within Psyr_4770at 5647.391 kb on - strand, within Psyr_4770at 5647.449 kb on + strand, within Psyr_4770at 5647.450 kb on - strand, within Psyr_4770at 5647.453 kb on + strand, within Psyr_4770at 5647.453 kb on + strand, within Psyr_4770at 5647.453 kb on + strand, within Psyr_4770at 5647.453 kb on + strand, within Psyr_4770at 5647.453 kb on + strand, within Psyr_4770at 5647.453 kb on + strand, within Psyr_4770at 5647.453 kb on + strand, within Psyr_4770at 5647.453 kb on + strand, within Psyr_4770at 5647.453 kb on + strand, within Psyr_4770at 5647.454 kb on - strand, within Psyr_4770at 5647.454 kb on - strand, within Psyr_4770at 5647.454 kb on - strand, within Psyr_4770at 5647.454 kb on - strand, within Psyr_4770at 5647.454 kb on - strand, within Psyr_4770at 5647.454 kb on - strand, within Psyr_4770at 5647.454 kb on - strand, within Psyr_4770at 5647.537 kb on + strand, within Psyr_4770at 5647.571 kb on - strand, within Psyr_4770at 5647.579 kb on + strand, within Psyr_4770at 5647.579 kb on + strand, within Psyr_4770at 5647.579 kb on + strand, within Psyr_4770at 5647.580 kb on - strand, within Psyr_4770at 5647.580 kb on - strand, within Psyr_4770

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Solanesol 10 mM
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5,644,257 + Psyr_4768 0.32 -0.4
5,644,383 + Psyr_4768 0.41 +0.4
5,644,383 + Psyr_4768 0.41 -0.7
5,644,383 + Psyr_4768 0.41 +1.0
5,644,492 - Psyr_4768 0.50 +0.3
5,644,500 + Psyr_4768 0.50 -0.1
5,644,501 - Psyr_4768 0.50 -0.6
5,644,602 + Psyr_4768 0.58 +0.6
5,644,603 - Psyr_4768 0.58 +0.3
5,644,603 - Psyr_4768 0.58 -2.2
5,644,767 + Psyr_4768 0.70 +1.0
5,644,820 + Psyr_4768 0.74 -0.9
5,644,821 - Psyr_4768 0.74 +2.1
5,644,821 - Psyr_4768 0.74 -1.1
5,644,878 + Psyr_4768 0.79 +0.3
5,644,878 + Psyr_4768 0.79 -0.3
5,644,878 + Psyr_4768 0.79 -0.3
5,644,878 + Psyr_4768 0.79 -0.9
5,644,879 - Psyr_4768 0.79 -1.2
5,644,879 - Psyr_4768 0.79 -1.4
5,645,020 - Psyr_4768 0.89 +0.1
5,645,084 + +0.2
5,645,085 - +0.7
5,645,088 + -0.5
5,645,088 + +0.0
5,645,088 + -0.4
5,645,088 + +2.3
5,645,088 + -0.4
5,645,088 + +0.0
5,645,089 - -0.2
5,645,089 - -1.5
5,645,089 - +0.5
5,645,089 - +0.3
5,645,089 - -1.1
5,645,089 - -0.4
5,645,113 + +0.5
5,645,113 + -3.0
5,645,155 + -1.3
5,645,156 - +1.8
5,645,156 - -0.8
5,645,156 - +1.2
5,645,157 + -0.2
5,645,157 + +0.7
5,645,157 + -0.5
5,645,158 - -0.6
5,645,168 + +0.1
5,645,169 - +0.1
5,645,346 + Psyr_4769 0.13 +0.0
5,645,347 - Psyr_4769 0.13 +0.0
5,645,347 - Psyr_4769 0.13 -0.1
5,645,347 - Psyr_4769 0.13 -0.2
5,645,347 - Psyr_4769 0.13 -0.9
5,645,555 - Psyr_4769 0.27 -1.7
5,645,600 + Psyr_4769 0.31 -0.8
5,645,664 + Psyr_4769 0.35 -1.6
5,645,665 - Psyr_4769 0.35 -0.1
5,645,665 - Psyr_4769 0.35 -0.7
5,645,722 - Psyr_4769 0.39 +0.1
5,645,722 - Psyr_4769 0.39 -0.6
5,645,722 - Psyr_4769 0.39 +1.0
5,645,813 - Psyr_4769 0.46 -0.6
5,645,873 - Psyr_4769 0.50 -0.9
5,645,911 - Psyr_4769 0.53 +0.3
5,645,987 + Psyr_4769 0.58 -1.0
5,646,246 + Psyr_4769 0.76 -0.9
5,646,314 + Psyr_4769 0.81 -0.1
5,646,314 + Psyr_4769 0.81 -1.4
5,646,449 - +1.6
5,646,449 - -0.3
5,646,533 + +1.4
5,646,533 + -0.0
5,646,533 + -0.4
5,646,534 - -1.4
5,646,534 - -0.1
5,646,681 + +0.2
5,646,682 - -1.2
5,646,716 + +0.8
5,646,717 - -0.6
5,646,718 + +0.4
5,646,718 + -0.1
5,646,719 - +0.4
5,646,724 + +0.4
5,646,744 + -1.7
5,646,744 + +0.4
5,646,744 + +0.4
5,646,744 + -1.2
5,646,745 - -0.3
5,646,745 - +0.6
5,646,745 - -0.9
5,646,792 + +0.4
5,646,807 + +3.8
5,646,808 - +2.5
5,646,811 - -0.3
5,646,859 - -1.2
5,646,875 + -0.2
5,646,875 + -1.6
5,647,027 + +0.1
5,647,106 - Psyr_4770 0.10 +0.0
5,647,118 - Psyr_4770 0.11 -0.5
5,647,118 - Psyr_4770 0.11 -0.6
5,647,171 + Psyr_4770 0.13 -0.3
5,647,171 + Psyr_4770 0.13 -0.2
5,647,172 - Psyr_4770 0.13 -0.7
5,647,172 - +1.3
5,647,196 + Psyr_4770 0.14 +0.7
5,647,196 + Psyr_4770 0.14 -0.7
5,647,197 - Psyr_4770 0.14 +0.3
5,647,197 - Psyr_4770 0.14 -1.0
5,647,197 - Psyr_4770 0.14 -0.8
5,647,390 + Psyr_4770 0.21 -2.7
5,647,391 - Psyr_4770 0.21 -0.6
5,647,449 + Psyr_4770 0.23 +1.4
5,647,450 - Psyr_4770 0.23 -0.4
5,647,453 + Psyr_4770 0.23 -1.7
5,647,453 + Psyr_4770 0.23 +0.9
5,647,453 + Psyr_4770 0.23 -1.8
5,647,453 + Psyr_4770 0.23 +0.0
5,647,453 + Psyr_4770 0.23 +0.3
5,647,453 + Psyr_4770 0.23 -0.1
5,647,453 + Psyr_4770 0.23 -0.6
5,647,453 + Psyr_4770 0.23 -0.4
5,647,453 + Psyr_4770 0.23 +0.3
5,647,454 - Psyr_4770 0.23 +0.4
5,647,454 - Psyr_4770 0.23 +3.3
5,647,454 - Psyr_4770 0.23 +0.5
5,647,454 - Psyr_4770 0.23 -0.7
5,647,454 - Psyr_4770 0.23 +1.3
5,647,454 - Psyr_4770 0.23 +3.0
5,647,454 - Psyr_4770 0.23 -0.7
5,647,537 + Psyr_4770 0.26 -0.7
5,647,571 - Psyr_4770 0.27 +0.7
5,647,579 + Psyr_4770 0.28 +1.6
5,647,579 + Psyr_4770 0.28 -1.0
5,647,579 + Psyr_4770 0.28 +1.3
5,647,580 - Psyr_4770 0.28 +1.4
5,647,580 - Psyr_4770 0.28 +2.3

Or see this region's nucleotide sequence