Experiment: KB with Solanesol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4575 and Psyr_4576 are separated by 242 nucleotides Psyr_4576 and Psyr_4577 are separated by 201 nucleotides Psyr_4577 and Psyr_4578 are separated by 11 nucleotides Psyr_4578 and Psyr_4579 are separated by 34 nucleotides
Psyr_4575: Psyr_4575 - adenosylmethionine decarboxylase proenzyme, at 5,438,098 to 5,438,892
_4575
Psyr_4576: Psyr_4576 - OsmC-like protein, at 5,439,135 to 5,439,557
_4576
Psyr_4577: Psyr_4577 - Cyclic nucleotide-binding:Bacterial regulatory protein, Crp, at 5,439,759 to 5,440,403
_4577
Psyr_4578: Psyr_4578 - conserved hypothetical protein, at 5,440,415 to 5,441,110
_4578
Psyr_4579: Psyr_4579 - indole-3-glycerol phosphate synthase, at 5,441,145 to 5,441,981
_4579
Position (kb) 5439
5440
5441 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5438.762 kb on + strand, within Psyr_4575 at 5438.762 kb on + strand, within Psyr_4575 at 5438.762 kb on + strand, within Psyr_4575 at 5438.762 kb on + strand, within Psyr_4575 at 5438.763 kb on - strand, within Psyr_4575 at 5438.763 kb on - strand, within Psyr_4575 at 5438.763 kb on - strand, within Psyr_4575 at 5438.777 kb on + strand, within Psyr_4575 at 5438.778 kb on - strand, within Psyr_4575 at 5438.778 kb on - strand, within Psyr_4575 at 5438.778 kb on - strand, within Psyr_4575 at 5438.778 kb on - strand, within Psyr_4575 at 5438.786 kb on + strand, within Psyr_4575 at 5438.786 kb on + strand, within Psyr_4575 at 5438.786 kb on + strand, within Psyr_4575 at 5438.786 kb on + strand, within Psyr_4575 at 5438.786 kb on + strand, within Psyr_4575 at 5438.787 kb on - strand, within Psyr_4575 at 5438.787 kb on - strand, within Psyr_4575 at 5438.817 kb on - strand at 5438.817 kb on - strand at 5438.828 kb on + strand at 5438.828 kb on + strand at 5438.829 kb on - strand at 5438.829 kb on - strand at 5438.829 kb on - strand at 5438.907 kb on + strand at 5438.907 kb on + strand at 5438.907 kb on + strand at 5438.907 kb on + strand at 5438.907 kb on + strand at 5438.907 kb on + strand at 5438.907 kb on + strand at 5438.907 kb on + strand at 5438.907 kb on + strand at 5438.907 kb on + strand at 5438.907 kb on + strand at 5438.908 kb on - strand at 5438.908 kb on - strand at 5438.908 kb on - strand at 5438.908 kb on - strand at 5438.908 kb on - strand at 5438.908 kb on - strand at 5438.908 kb on - strand at 5438.908 kb on - strand at 5438.908 kb on - strand at 5438.908 kb on - strand at 5438.908 kb on - strand at 5438.910 kb on - strand at 5438.971 kb on + strand at 5438.972 kb on - strand at 5438.972 kb on - strand at 5439.039 kb on + strand at 5439.039 kb on + strand at 5439.039 kb on + strand at 5439.039 kb on + strand at 5439.039 kb on + strand at 5439.040 kb on - strand at 5439.040 kb on - strand at 5439.040 kb on - strand at 5439.069 kb on + strand at 5439.070 kb on - strand at 5439.113 kb on - strand at 5439.113 kb on - strand at 5439.211 kb on + strand, within Psyr_4576 at 5439.211 kb on + strand, within Psyr_4576 at 5439.211 kb on + strand, within Psyr_4576 at 5439.211 kb on + strand, within Psyr_4576 at 5439.211 kb on + strand, within Psyr_4576 at 5439.211 kb on + strand, within Psyr_4576 at 5439.211 kb on + strand, within Psyr_4576 at 5439.212 kb on - strand, within Psyr_4576 at 5439.212 kb on - strand, within Psyr_4576 at 5439.212 kb on - strand, within Psyr_4576 at 5439.212 kb on - strand, within Psyr_4576 at 5439.230 kb on - strand, within Psyr_4576 at 5439.445 kb on - strand, within Psyr_4576 at 5439.445 kb on - strand, within Psyr_4576 at 5439.575 kb on - strand at 5439.575 kb on - strand at 5439.575 kb on - strand at 5439.594 kb on + strand at 5439.661 kb on + strand at 5439.661 kb on + strand at 5439.661 kb on + strand at 5439.661 kb on + strand at 5439.662 kb on - strand at 5439.662 kb on - strand at 5439.662 kb on - strand at 5439.662 kb on - strand at 5439.662 kb on - strand at 5439.662 kb on - strand at 5439.662 kb on - strand at 5439.662 kb on - strand at 5439.669 kb on + strand at 5439.669 kb on + strand at 5439.670 kb on - strand at 5439.670 kb on - strand at 5439.670 kb on - strand at 5439.670 kb on - strand at 5439.711 kb on - strand at 5439.714 kb on + strand at 5439.714 kb on + strand at 5439.714 kb on + strand at 5439.715 kb on - strand at 5439.715 kb on - strand at 5439.715 kb on - strand at 5439.715 kb on - strand at 5439.715 kb on - strand at 5439.715 kb on - strand at 5439.715 kb on - strand at 5439.715 kb on - strand at 5439.715 kb on - strand at 5439.715 kb on - strand at 5439.716 kb on + strand at 5439.716 kb on + strand at 5439.716 kb on + strand at 5439.716 kb on + strand at 5439.716 kb on + strand at 5439.716 kb on + strand at 5439.716 kb on + strand at 5439.717 kb on - strand at 5439.717 kb on - strand at 5439.717 kb on - strand at 5439.717 kb on - strand at 5439.717 kb on - strand at 5439.717 kb on - strand at 5439.717 kb on - strand at 5439.717 kb on - strand at 5439.717 kb on - strand at 5439.717 kb on - strand at 5439.717 kb on - strand at 5439.720 kb on + strand at 5439.720 kb on + strand at 5439.721 kb on - strand at 5439.736 kb on - strand at 5439.742 kb on + strand at 5439.742 kb on + strand at 5439.742 kb on + strand at 5439.743 kb on - strand at 5439.743 kb on - strand at 5439.769 kb on + strand at 5439.769 kb on + strand at 5439.952 kb on - strand, within Psyr_4577 at 5440.068 kb on + strand, within Psyr_4577 at 5440.069 kb on - strand, within Psyr_4577 at 5440.069 kb on - strand, within Psyr_4577 at 5440.069 kb on - strand, within Psyr_4577 at 5440.114 kb on - strand, within Psyr_4577 at 5440.151 kb on + strand, within Psyr_4577 at 5440.151 kb on + strand, within Psyr_4577 at 5440.151 kb on + strand, within Psyr_4577 at 5440.152 kb on - strand, within Psyr_4577 at 5440.152 kb on - strand, within Psyr_4577 at 5440.413 kb on - strand at 5440.413 kb on - strand at 5440.413 kb on - strand at 5440.488 kb on + strand, within Psyr_4578 at 5440.488 kb on + strand, within Psyr_4578 at 5440.488 kb on + strand, within Psyr_4578 at 5440.778 kb on + strand, within Psyr_4578 at 5440.779 kb on - strand, within Psyr_4578 at 5440.779 kb on - strand, within Psyr_4578 at 5440.779 kb on - strand, within Psyr_4578 at 5440.799 kb on + strand, within Psyr_4578 at 5440.799 kb on + strand, within Psyr_4578 at 5440.799 kb on + strand, within Psyr_4578 at 5440.800 kb on - strand, within Psyr_4578 at 5440.800 kb on - strand, within Psyr_4578 at 5440.801 kb on + strand, within Psyr_4578 at 5440.801 kb on + strand, within Psyr_4578 at 5440.836 kb on + strand, within Psyr_4578 at 5440.837 kb on - strand, within Psyr_4578 at 5440.837 kb on - strand, within Psyr_4578 at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.166 kb on + strand at 5441.167 kb on - strand at 5441.257 kb on + strand, within Psyr_4579 at 5441.360 kb on + strand, within Psyr_4579 at 5441.360 kb on + strand, within Psyr_4579 at 5441.384 kb on + strand, within Psyr_4579 at 5441.384 kb on + strand, within Psyr_4579 at 5441.384 kb on + strand, within Psyr_4579 at 5441.384 kb on + strand, within Psyr_4579 at 5441.385 kb on - strand, within Psyr_4579 at 5441.385 kb on - strand, within Psyr_4579 at 5441.385 kb on - strand, within Psyr_4579
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Solanesol 10 mM remove 5,438,762 + Psyr_4575 0.84 -0.1 5,438,762 + Psyr_4575 0.84 +0.0 5,438,762 + Psyr_4575 0.84 +0.6 5,438,762 + Psyr_4575 0.84 +0.6 5,438,763 - Psyr_4575 0.84 -0.3 5,438,763 - Psyr_4575 0.84 +0.8 5,438,763 - Psyr_4575 0.84 -0.9 5,438,777 + Psyr_4575 0.85 -0.6 5,438,778 - Psyr_4575 0.86 +0.2 5,438,778 - Psyr_4575 0.86 +1.2 5,438,778 - Psyr_4575 0.86 +0.8 5,438,778 - Psyr_4575 0.86 -1.4 5,438,786 + Psyr_4575 0.87 -0.2 5,438,786 + Psyr_4575 0.87 +0.7 5,438,786 + Psyr_4575 0.87 -0.7 5,438,786 + Psyr_4575 0.87 -1.5 5,438,786 + Psyr_4575 0.87 -3.2 5,438,787 - Psyr_4575 0.87 +1.5 5,438,787 - Psyr_4575 0.87 -0.3 5,438,817 - -0.9 5,438,817 - +0.5 5,438,828 + -0.4 5,438,828 + -0.8 5,438,829 - +2.8 5,438,829 - +0.7 5,438,829 - +0.8 5,438,907 + +0.8 5,438,907 + +0.3 5,438,907 + -0.8 5,438,907 + -0.3 5,438,907 + -0.9 5,438,907 + +0.9 5,438,907 + +2.2 5,438,907 + +0.4 5,438,907 + -2.2 5,438,907 + -0.5 5,438,907 + +0.0 5,438,908 - +0.1 5,438,908 - +1.0 5,438,908 - +1.3 5,438,908 - -0.5 5,438,908 - -1.8 5,438,908 - +3.4 5,438,908 - +0.9 5,438,908 - +0.7 5,438,908 - +0.5 5,438,908 - +0.7 5,438,908 - -1.4 5,438,910 - -1.6 5,438,971 + -0.2 5,438,972 - +1.7 5,438,972 - +0.6 5,439,039 + -1.0 5,439,039 + -0.7 5,439,039 + +1.0 5,439,039 + +2.2 5,439,039 + +0.2 5,439,040 - +1.6 5,439,040 - +2.2 5,439,040 - +0.5 5,439,069 + -0.6 5,439,070 - +0.2 5,439,113 - -0.6 5,439,113 - -0.5 5,439,211 + Psyr_4576 0.18 -2.5 5,439,211 + Psyr_4576 0.18 -0.5 5,439,211 + Psyr_4576 0.18 +0.3 5,439,211 + Psyr_4576 0.18 +1.0 5,439,211 + Psyr_4576 0.18 -2.1 5,439,211 + Psyr_4576 0.18 -0.2 5,439,211 + Psyr_4576 0.18 +1.2 5,439,212 - Psyr_4576 0.18 +0.6 5,439,212 - Psyr_4576 0.18 +0.2 5,439,212 - Psyr_4576 0.18 +0.2 5,439,212 - Psyr_4576 0.18 +1.0 5,439,230 - Psyr_4576 0.22 -0.2 5,439,445 - Psyr_4576 0.73 -0.3 5,439,445 - Psyr_4576 0.73 -0.0 5,439,575 - -1.8 5,439,575 - +1.5 5,439,575 - +0.4 5,439,594 + -2.4 5,439,661 + +1.2 5,439,661 + -0.7 5,439,661 + +0.4 5,439,661 + -0.4 5,439,662 - -0.4 5,439,662 - +0.2 5,439,662 - -1.4 5,439,662 - -0.4 5,439,662 - +2.4 5,439,662 - -1.5 5,439,662 - -0.3 5,439,662 - -1.3 5,439,669 + +2.8 5,439,669 + +2.8 5,439,670 - -0.2 5,439,670 - +1.3 5,439,670 - -0.7 5,439,670 - -2.1 5,439,711 - -0.2 5,439,714 + -1.1 5,439,714 + +1.6 5,439,714 + -2.3 5,439,715 - +0.0 5,439,715 - +0.6 5,439,715 - +0.4 5,439,715 - -0.3 5,439,715 - -0.9 5,439,715 - +0.7 5,439,715 - +0.8 5,439,715 - -1.6 5,439,715 - -0.3 5,439,715 - +0.1 5,439,716 + -1.3 5,439,716 + +0.2 5,439,716 + +0.2 5,439,716 + +1.2 5,439,716 + -0.0 5,439,716 + +1.2 5,439,716 + -0.5 5,439,717 - +0.5 5,439,717 - -1.4 5,439,717 - -0.6 5,439,717 - +1.0 5,439,717 - -1.5 5,439,717 - -0.7 5,439,717 - +0.5 5,439,717 - +1.6 5,439,717 - +1.0 5,439,717 - +0.1 5,439,717 - +1.2 5,439,720 + +0.9 5,439,720 + -0.1 5,439,721 - +0.3 5,439,736 - -1.6 5,439,742 + -0.8 5,439,742 + -0.0 5,439,742 + -0.3 5,439,743 - +0.6 5,439,743 - +1.5 5,439,769 + +0.3 5,439,769 + +0.7 5,439,952 - Psyr_4577 0.30 +1.2 5,440,068 + Psyr_4577 0.48 +1.5 5,440,069 - Psyr_4577 0.48 -0.6 5,440,069 - Psyr_4577 0.48 +0.4 5,440,069 - Psyr_4577 0.48 -0.6 5,440,114 - Psyr_4577 0.55 +1.2 5,440,151 + Psyr_4577 0.61 +1.9 5,440,151 + Psyr_4577 0.61 +0.2 5,440,151 + Psyr_4577 0.61 +0.1 5,440,152 - Psyr_4577 0.61 +0.9 5,440,152 - Psyr_4577 0.61 +0.8 5,440,413 - -1.0 5,440,413 - +1.2 5,440,413 - +0.8 5,440,488 + Psyr_4578 0.10 -0.6 5,440,488 + Psyr_4578 0.10 +0.3 5,440,488 + Psyr_4578 0.10 +1.2 5,440,778 + Psyr_4578 0.52 +0.2 5,440,779 - Psyr_4578 0.52 +0.8 5,440,779 - Psyr_4578 0.52 -1.1 5,440,779 - Psyr_4578 0.52 +0.9 5,440,799 + Psyr_4578 0.55 -2.5 5,440,799 + Psyr_4578 0.55 +1.6 5,440,799 + Psyr_4578 0.55 +0.5 5,440,800 - Psyr_4578 0.55 -1.4 5,440,800 - Psyr_4578 0.55 +0.9 5,440,801 + Psyr_4578 0.55 +1.2 5,440,801 + Psyr_4578 0.55 +0.4 5,440,836 + Psyr_4578 0.60 +0.6 5,440,837 - Psyr_4578 0.61 +1.0 5,440,837 - Psyr_4578 0.61 +1.1 5,441,087 + +1.2 5,441,087 + -3.5 5,441,087 + -0.6 5,441,087 + +2.5 5,441,087 + +0.1 5,441,087 + -0.6 5,441,087 + +0.0 5,441,087 + +1.1 5,441,087 + +2.8 5,441,087 + +0.7 5,441,087 + -0.4 5,441,087 + -0.7 5,441,087 + +0.3 5,441,087 + -0.2 5,441,087 + +1.1 5,441,087 + +1.4 5,441,087 + -0.3 5,441,087 + +0.1 5,441,087 + +0.4 5,441,087 + +0.2 5,441,087 + +0.2 5,441,087 + +1.2 5,441,087 + +0.7 5,441,087 + +0.0 5,441,087 + -0.3 5,441,087 + +1.7 5,441,087 + -0.5 5,441,087 + +0.3 5,441,087 + -0.4 5,441,087 + +0.0 5,441,087 + -1.0 5,441,087 + -0.0 5,441,088 - -1.4 5,441,088 - +2.3 5,441,088 - -0.6 5,441,088 - -0.9 5,441,088 - +0.5 5,441,088 - +0.3 5,441,088 - +2.1 5,441,088 - +1.1 5,441,088 - +1.2 5,441,088 - -0.4 5,441,088 - +0.2 5,441,088 - +0.8 5,441,088 - -1.8 5,441,088 - -1.1 5,441,088 - -1.2 5,441,088 - +0.3 5,441,088 - +0.8 5,441,166 + -0.6 5,441,167 - -2.5 5,441,257 + Psyr_4579 0.13 +1.7 5,441,360 + Psyr_4579 0.26 +0.1 5,441,360 + Psyr_4579 0.26 +1.7 5,441,384 + Psyr_4579 0.29 +0.2 5,441,384 + Psyr_4579 0.29 +0.0 5,441,384 + Psyr_4579 0.29 +0.5 5,441,384 + Psyr_4579 0.29 -0.4 5,441,385 - Psyr_4579 0.29 +2.0 5,441,385 - Psyr_4579 0.29 -0.2 5,441,385 - Psyr_4579 0.29 +1.2
Or see this region's nucleotide sequence