Experiment: KB with Solanesol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4417 and Psyr_4418 are separated by 135 nucleotides Psyr_4418 and Psyr_4419 overlap by 1 nucleotides
Psyr_4417: Psyr_4417 - Ferredoxin--nitrite reductase, at 5,280,617 to 5,281,960
_4417
Psyr_4418: Psyr_4418 - Precorrin-6Y C5,15-methyltransferase (decarboxylating), at 5,282,096 to 5,283,298
_4418
Psyr_4419: Psyr_4419 - Cobalamin (vitamin B12) biosynthesis CbiD protein, at 5,283,298 to 5,284,410
_4419
Position (kb) 5282
5283
5284 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5281.788 kb on + strand, within Psyr_4417 at 5281.789 kb on - strand, within Psyr_4417 at 5282.001 kb on + strand at 5282.001 kb on + strand at 5282.002 kb on - strand at 5282.012 kb on + strand at 5282.013 kb on - strand at 5282.032 kb on + strand at 5282.032 kb on + strand at 5282.033 kb on - strand at 5282.089 kb on + strand at 5282.089 kb on + strand at 5282.089 kb on + strand at 5282.089 kb on + strand at 5282.089 kb on + strand at 5282.089 kb on + strand at 5282.090 kb on - strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.139 kb on - strand at 5282.408 kb on + strand, within Psyr_4418 at 5282.408 kb on + strand, within Psyr_4418 at 5282.409 kb on - strand, within Psyr_4418 at 5282.409 kb on - strand, within Psyr_4418 at 5282.803 kb on - strand, within Psyr_4418 at 5283.208 kb on + strand at 5283.591 kb on - strand, within Psyr_4419 at 5283.727 kb on + strand, within Psyr_4419 at 5283.728 kb on - strand, within Psyr_4419 at 5283.728 kb on - strand, within Psyr_4419 at 5283.871 kb on + strand, within Psyr_4419 at 5283.871 kb on + strand, within Psyr_4419 at 5283.871 kb on + strand, within Psyr_4419 at 5283.871 kb on + strand, within Psyr_4419 at 5283.871 kb on + strand, within Psyr_4419 at 5283.872 kb on - strand, within Psyr_4419 at 5283.872 kb on - strand, within Psyr_4419 at 5283.872 kb on - strand, within Psyr_4419 at 5283.872 kb on - strand, within Psyr_4419 at 5283.874 kb on - strand, within Psyr_4419 at 5283.977 kb on - strand, within Psyr_4419
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Solanesol 10 mM remove 5,281,788 + Psyr_4417 0.87 +1.6 5,281,789 - Psyr_4417 0.87 -0.6 5,282,001 + +0.3 5,282,001 + -1.4 5,282,002 - -2.9 5,282,012 + +0.7 5,282,013 - -0.8 5,282,032 + -0.4 5,282,032 + -1.6 5,282,033 - +1.4 5,282,089 + +0.7 5,282,089 + -0.3 5,282,089 + -0.7 5,282,089 + +0.5 5,282,089 + +1.2 5,282,089 + -0.7 5,282,090 - -0.1 5,282,093 + -2.1 5,282,093 + +0.2 5,282,093 + +0.6 5,282,093 + -0.4 5,282,093 + -0.3 5,282,093 + -0.0 5,282,093 + -1.0 5,282,093 + -1.4 5,282,093 + -1.4 5,282,093 + -0.0 5,282,093 + +1.6 5,282,093 + -2.2 5,282,093 + -0.6 5,282,093 + +1.0 5,282,093 + +0.3 5,282,093 + -0.2 5,282,093 + -2.0 5,282,093 + +2.2 5,282,093 + +0.6 5,282,093 + -0.1 5,282,093 + +0.0 5,282,093 + -0.0 5,282,094 - +2.2 5,282,094 - -1.3 5,282,094 - -1.2 5,282,094 - -0.4 5,282,094 - -0.9 5,282,094 - +0.3 5,282,094 - -0.0 5,282,094 - +0.9 5,282,094 - -0.6 5,282,094 - +0.3 5,282,094 - +0.7 5,282,094 - +1.2 5,282,094 - -1.9 5,282,094 - -2.0 5,282,094 - +0.8 5,282,139 - -0.1 5,282,408 + Psyr_4418 0.26 -0.3 5,282,408 + Psyr_4418 0.26 -0.5 5,282,409 - Psyr_4418 0.26 -1.8 5,282,409 - Psyr_4418 0.26 -1.4 5,282,803 - Psyr_4418 0.59 -1.6 5,283,208 + -1.2 5,283,591 - Psyr_4419 0.26 +0.8 5,283,727 + Psyr_4419 0.39 -0.3 5,283,728 - Psyr_4419 0.39 -0.7 5,283,728 - Psyr_4419 0.39 +0.2 5,283,871 + Psyr_4419 0.51 -0.9 5,283,871 + Psyr_4419 0.51 -0.2 5,283,871 + Psyr_4419 0.51 +0.1 5,283,871 + Psyr_4419 0.51 +1.2 5,283,871 + Psyr_4419 0.51 +2.2 5,283,872 - Psyr_4419 0.52 -1.6 5,283,872 - Psyr_4419 0.52 +0.4 5,283,872 - Psyr_4419 0.52 +0.2 5,283,872 - Psyr_4419 0.52 +0.8 5,283,874 - Psyr_4419 0.52 +0.7 5,283,977 - Psyr_4419 0.61 +2.2
Or see this region's nucleotide sequence