Experiment: KB with Solanesol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1224 and Psyr_1225 overlap by 4 nucleotides Psyr_1225 and Psyr_1226 are separated by 414 nucleotides Psyr_1226 and Psyr_RNA20 are separated by 202 nucleotides
Psyr_1224: Psyr_1224 - type III effector HopZ3, at 1,382,497 to 1,383,732
_1224
Psyr_1225: Psyr_1225 - hypothetical protein, at 1,383,729 to 1,384,181
_1225
Psyr_1226: Psyr_1226 - hypothetical protein, at 1,384,596 to 1,384,949
_1226
Psyr_RNA20: Psyr_RNA20 - tRNA-Leu, at 1,385,152 to 1,385,236
_RNA20
Position (kb) 1383
1384
1385 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 1382.903 kb on - strand, within Psyr_1224 at 1382.923 kb on + strand, within Psyr_1224 at 1382.923 kb on + strand, within Psyr_1224 at 1382.923 kb on + strand, within Psyr_1224 at 1382.923 kb on + strand, within Psyr_1224 at 1382.924 kb on - strand, within Psyr_1224 at 1382.924 kb on - strand, within Psyr_1224 at 1382.924 kb on - strand, within Psyr_1224 at 1382.924 kb on - strand, within Psyr_1224 at 1382.924 kb on - strand, within Psyr_1224 at 1382.924 kb on - strand, within Psyr_1224 at 1382.924 kb on - strand, within Psyr_1224 at 1382.924 kb on - strand, within Psyr_1224 at 1382.924 kb on - strand, within Psyr_1224 at 1382.924 kb on - strand, within Psyr_1224 at 1382.926 kb on - strand, within Psyr_1224 at 1382.998 kb on + strand, within Psyr_1224 at 1382.998 kb on + strand, within Psyr_1224 at 1382.998 kb on + strand, within Psyr_1224 at 1382.998 kb on + strand, within Psyr_1224 at 1382.999 kb on - strand, within Psyr_1224 at 1382.999 kb on - strand, within Psyr_1224 at 1382.999 kb on - strand, within Psyr_1224 at 1382.999 kb on - strand, within Psyr_1224 at 1383.000 kb on + strand, within Psyr_1224 at 1383.001 kb on - strand, within Psyr_1224 at 1383.032 kb on + strand, within Psyr_1224 at 1383.045 kb on + strand, within Psyr_1224 at 1383.126 kb on + strand, within Psyr_1224 at 1383.153 kb on + strand, within Psyr_1224 at 1383.154 kb on - strand, within Psyr_1224 at 1383.204 kb on + strand, within Psyr_1224 at 1383.257 kb on + strand, within Psyr_1224 at 1383.273 kb on + strand, within Psyr_1224 at 1383.287 kb on - strand, within Psyr_1224 at 1383.330 kb on + strand, within Psyr_1224 at 1383.330 kb on + strand, within Psyr_1224 at 1383.330 kb on + strand, within Psyr_1224 at 1383.331 kb on - strand, within Psyr_1224 at 1383.331 kb on - strand, within Psyr_1224 at 1383.335 kb on - strand, within Psyr_1224 at 1383.335 kb on - strand, within Psyr_1224 at 1383.355 kb on + strand, within Psyr_1224 at 1383.355 kb on + strand at 1383.356 kb on - strand, within Psyr_1224 at 1383.356 kb on - strand, within Psyr_1224 at 1383.357 kb on + strand, within Psyr_1224 at 1383.357 kb on + strand, within Psyr_1224 at 1383.357 kb on + strand, within Psyr_1224 at 1383.357 kb on + strand, within Psyr_1224 at 1383.357 kb on + strand, within Psyr_1224 at 1383.357 kb on + strand, within Psyr_1224 at 1383.357 kb on + strand, within Psyr_1224 at 1383.358 kb on - strand, within Psyr_1224 at 1383.358 kb on - strand, within Psyr_1224 at 1383.358 kb on - strand, within Psyr_1224 at 1383.358 kb on - strand, within Psyr_1224 at 1383.358 kb on - strand, within Psyr_1224 at 1383.358 kb on - strand, within Psyr_1224 at 1383.358 kb on - strand, within Psyr_1224 at 1383.358 kb on - strand, within Psyr_1224 at 1383.396 kb on + strand, within Psyr_1224 at 1383.396 kb on + strand, within Psyr_1224 at 1383.396 kb on + strand, within Psyr_1224 at 1383.396 kb on + strand, within Psyr_1224 at 1383.396 kb on + strand, within Psyr_1224 at 1383.396 kb on + strand, within Psyr_1224 at 1383.396 kb on + strand, within Psyr_1224 at 1383.396 kb on + strand, within Psyr_1224 at 1383.396 kb on + strand, within Psyr_1224 at 1383.396 kb on + strand, within Psyr_1224 at 1383.396 kb on + strand, within Psyr_1224 at 1383.396 kb on + strand, within Psyr_1224 at 1383.396 kb on + strand, within Psyr_1224 at 1383.396 kb on + strand, within Psyr_1224 at 1383.396 kb on + strand, within Psyr_1224 at 1383.396 kb on + strand, within Psyr_1224 at 1383.396 kb on + strand, within Psyr_1224 at 1383.397 kb on - strand, within Psyr_1224 at 1383.397 kb on - strand, within Psyr_1224 at 1383.397 kb on - strand, within Psyr_1224 at 1383.397 kb on - strand, within Psyr_1224 at 1383.397 kb on - strand, within Psyr_1224 at 1383.397 kb on - strand, within Psyr_1224 at 1383.397 kb on - strand, within Psyr_1224 at 1383.397 kb on - strand, within Psyr_1224 at 1383.397 kb on - strand, within Psyr_1224 at 1383.397 kb on - strand, within Psyr_1224 at 1383.400 kb on - strand, within Psyr_1224 at 1383.400 kb on - strand, within Psyr_1224 at 1383.451 kb on + strand, within Psyr_1224 at 1383.495 kb on + strand, within Psyr_1224 at 1383.495 kb on + strand, within Psyr_1224 at 1383.496 kb on - strand, within Psyr_1224 at 1383.496 kb on - strand, within Psyr_1224 at 1383.530 kb on + strand, within Psyr_1224 at 1383.530 kb on + strand, within Psyr_1224 at 1383.530 kb on + strand, within Psyr_1224 at 1383.530 kb on + strand, within Psyr_1224 at 1383.531 kb on - strand, within Psyr_1224 at 1383.531 kb on - strand, within Psyr_1224 at 1383.531 kb on - strand, within Psyr_1224 at 1383.584 kb on + strand, within Psyr_1224 at 1383.584 kb on + strand, within Psyr_1224 at 1383.584 kb on + strand, within Psyr_1224 at 1383.584 kb on + strand, within Psyr_1224 at 1383.584 kb on + strand, within Psyr_1224 at 1383.584 kb on + strand, within Psyr_1224 at 1383.585 kb on - strand, within Psyr_1224 at 1383.585 kb on - strand, within Psyr_1224 at 1383.585 kb on - strand, within Psyr_1224 at 1383.585 kb on - strand, within Psyr_1224 at 1383.585 kb on - strand, within Psyr_1224 at 1383.585 kb on - strand, within Psyr_1224 at 1383.585 kb on - strand, within Psyr_1224 at 1383.585 kb on - strand, within Psyr_1224 at 1383.585 kb on - strand, within Psyr_1224 at 1383.654 kb on + strand at 1383.655 kb on - strand at 1383.655 kb on - strand at 1383.659 kb on - strand at 1383.726 kb on + strand at 1383.727 kb on - strand at 1383.727 kb on - strand at 1383.760 kb on - strand at 1383.816 kb on + strand, within Psyr_1225 at 1384.025 kb on + strand, within Psyr_1225 at 1384.025 kb on + strand, within Psyr_1225 at 1384.026 kb on - strand, within Psyr_1225 at 1384.048 kb on + strand, within Psyr_1225 at 1384.048 kb on + strand, within Psyr_1225 at 1384.048 kb on + strand, within Psyr_1225 at 1384.061 kb on + strand, within Psyr_1225 at 1384.061 kb on + strand, within Psyr_1225 at 1384.061 kb on + strand, within Psyr_1225 at 1384.062 kb on - strand, within Psyr_1225 at 1384.062 kb on - strand, within Psyr_1225 at 1384.186 kb on + strand at 1384.186 kb on + strand at 1384.186 kb on + strand at 1384.186 kb on + strand at 1384.186 kb on + strand at 1384.186 kb on + strand at 1384.186 kb on + strand at 1384.186 kb on + strand at 1384.186 kb on + strand at 1384.186 kb on + strand at 1384.187 kb on - strand at 1384.187 kb on - strand at 1384.187 kb on - strand at 1384.187 kb on - strand at 1384.187 kb on - strand at 1384.187 kb on - strand at 1384.187 kb on - strand at 1384.188 kb on + strand at 1384.188 kb on + strand at 1384.188 kb on + strand at 1384.188 kb on + strand at 1384.189 kb on - strand at 1384.189 kb on - strand at 1384.295 kb on + strand at 1384.295 kb on + strand at 1384.295 kb on + strand at 1384.295 kb on + strand at 1384.295 kb on + strand at 1384.295 kb on + strand at 1384.296 kb on - strand at 1384.296 kb on - strand at 1384.296 kb on - strand at 1384.296 kb on - strand at 1384.298 kb on + strand at 1384.299 kb on - strand at 1384.394 kb on + strand at 1384.395 kb on - strand at 1384.399 kb on + strand at 1384.400 kb on - strand at 1384.429 kb on + strand at 1384.430 kb on - strand at 1384.430 kb on - strand at 1384.430 kb on - strand at 1384.457 kb on + strand at 1384.482 kb on + strand at 1384.482 kb on + strand at 1384.601 kb on - strand at 1384.601 kb on - strand at 1384.601 kb on - strand at 1384.753 kb on - strand, within Psyr_1226 at 1384.777 kb on - strand, within Psyr_1226 at 1384.890 kb on + strand, within Psyr_1226 at 1384.897 kb on + strand, within Psyr_1226 at 1384.898 kb on - strand, within Psyr_1226 at 1385.032 kb on + strand at 1385.032 kb on + strand at 1385.032 kb on + strand at 1385.033 kb on - strand at 1385.033 kb on - strand at 1385.033 kb on - strand at 1385.041 kb on + strand at 1385.042 kb on - strand at 1385.042 kb on - strand at 1385.052 kb on + strand at 1385.052 kb on + strand at 1385.052 kb on + strand at 1385.053 kb on - strand at 1385.053 kb on - strand at 1385.053 kb on - strand at 1385.148 kb on + strand at 1385.149 kb on - strand at 1385.149 kb on - strand at 1385.149 kb on - strand at 1385.149 kb on - strand at 1385.149 kb on - strand at 1385.149 kb on - strand at 1385.149 kb on - strand at 1385.149 kb on - strand at 1385.149 kb on - strand at 1385.149 kb on - strand at 1385.149 kb on - strand at 1385.149 kb on - strand at 1385.149 kb on - strand at 1385.149 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Solanesol 10 mM remove 1,382,903 - Psyr_1224 0.33 -0.0 1,382,923 + Psyr_1224 0.34 +1.1 1,382,923 + Psyr_1224 0.34 -0.9 1,382,923 + Psyr_1224 0.34 -0.5 1,382,923 + Psyr_1224 0.34 +1.7 1,382,924 - Psyr_1224 0.35 -0.4 1,382,924 - Psyr_1224 0.35 -0.3 1,382,924 - Psyr_1224 0.35 +0.2 1,382,924 - Psyr_1224 0.35 +1.0 1,382,924 - Psyr_1224 0.35 -0.3 1,382,924 - Psyr_1224 0.35 -1.5 1,382,924 - Psyr_1224 0.35 +5.4 1,382,924 - Psyr_1224 0.35 +1.3 1,382,924 - Psyr_1224 0.35 +2.5 1,382,924 - Psyr_1224 0.35 -1.6 1,382,926 - Psyr_1224 0.35 -0.4 1,382,998 + Psyr_1224 0.41 +1.7 1,382,998 + Psyr_1224 0.41 +0.4 1,382,998 + Psyr_1224 0.41 +0.7 1,382,998 + Psyr_1224 0.41 -2.3 1,382,999 - Psyr_1224 0.41 +1.1 1,382,999 - Psyr_1224 0.41 -0.6 1,382,999 - Psyr_1224 0.41 +0.2 1,382,999 - Psyr_1224 0.41 +3.1 1,383,000 + Psyr_1224 0.41 -1.3 1,383,001 - Psyr_1224 0.41 +1.1 1,383,032 + Psyr_1224 0.43 +0.7 1,383,045 + Psyr_1224 0.44 -0.3 1,383,126 + Psyr_1224 0.51 +0.2 1,383,153 + Psyr_1224 0.53 -0.8 1,383,154 - Psyr_1224 0.53 +1.1 1,383,204 + Psyr_1224 0.57 +1.8 1,383,257 + Psyr_1224 0.61 -0.4 1,383,273 + Psyr_1224 0.63 +0.2 1,383,287 - Psyr_1224 0.64 -0.3 1,383,330 + Psyr_1224 0.67 -0.2 1,383,330 + Psyr_1224 0.67 -1.1 1,383,330 + Psyr_1224 0.67 -0.3 1,383,331 - Psyr_1224 0.67 -0.3 1,383,331 - Psyr_1224 0.67 -1.7 1,383,335 - Psyr_1224 0.68 -1.4 1,383,335 - Psyr_1224 0.68 +1.7 1,383,355 + Psyr_1224 0.69 -0.7 1,383,355 + +1.8 1,383,356 - Psyr_1224 0.69 -0.6 1,383,356 - Psyr_1224 0.69 +0.1 1,383,357 + Psyr_1224 0.70 -1.1 1,383,357 + Psyr_1224 0.70 -0.3 1,383,357 + Psyr_1224 0.70 -1.2 1,383,357 + Psyr_1224 0.70 +1.3 1,383,357 + Psyr_1224 0.70 -1.1 1,383,357 + Psyr_1224 0.70 +0.4 1,383,357 + Psyr_1224 0.70 -0.4 1,383,358 - Psyr_1224 0.70 -1.4 1,383,358 - Psyr_1224 0.70 +0.2 1,383,358 - Psyr_1224 0.70 -0.3 1,383,358 - Psyr_1224 0.70 -1.0 1,383,358 - Psyr_1224 0.70 +0.6 1,383,358 - Psyr_1224 0.70 +0.2 1,383,358 - Psyr_1224 0.70 +0.5 1,383,358 - Psyr_1224 0.70 -0.9 1,383,396 + Psyr_1224 0.73 -0.8 1,383,396 + Psyr_1224 0.73 +0.4 1,383,396 + Psyr_1224 0.73 -0.6 1,383,396 + Psyr_1224 0.73 -0.5 1,383,396 + Psyr_1224 0.73 -1.5 1,383,396 + Psyr_1224 0.73 -0.1 1,383,396 + Psyr_1224 0.73 -0.4 1,383,396 + Psyr_1224 0.73 -1.9 1,383,396 + Psyr_1224 0.73 -2.7 1,383,396 + Psyr_1224 0.73 -0.9 1,383,396 + Psyr_1224 0.73 -0.4 1,383,396 + Psyr_1224 0.73 +1.5 1,383,396 + Psyr_1224 0.73 +1.7 1,383,396 + Psyr_1224 0.73 +0.7 1,383,396 + Psyr_1224 0.73 -0.0 1,383,396 + Psyr_1224 0.73 +1.0 1,383,396 + Psyr_1224 0.73 +2.5 1,383,397 - Psyr_1224 0.73 +0.5 1,383,397 - Psyr_1224 0.73 -0.7 1,383,397 - Psyr_1224 0.73 -0.7 1,383,397 - Psyr_1224 0.73 -0.2 1,383,397 - Psyr_1224 0.73 +0.5 1,383,397 - Psyr_1224 0.73 +1.3 1,383,397 - Psyr_1224 0.73 +1.5 1,383,397 - Psyr_1224 0.73 -1.3 1,383,397 - Psyr_1224 0.73 +0.1 1,383,397 - Psyr_1224 0.73 -4.0 1,383,400 - Psyr_1224 0.73 -4.1 1,383,400 - Psyr_1224 0.73 +1.4 1,383,451 + Psyr_1224 0.77 -0.4 1,383,495 + Psyr_1224 0.81 +0.3 1,383,495 + Psyr_1224 0.81 -1.8 1,383,496 - Psyr_1224 0.81 +1.9 1,383,496 - Psyr_1224 0.81 +0.8 1,383,530 + Psyr_1224 0.84 -0.6 1,383,530 + Psyr_1224 0.84 +0.4 1,383,530 + Psyr_1224 0.84 -0.2 1,383,530 + Psyr_1224 0.84 -0.1 1,383,531 - Psyr_1224 0.84 -0.4 1,383,531 - Psyr_1224 0.84 -0.0 1,383,531 - Psyr_1224 0.84 +1.5 1,383,584 + Psyr_1224 0.88 +0.8 1,383,584 + Psyr_1224 0.88 +0.2 1,383,584 + Psyr_1224 0.88 -1.3 1,383,584 + Psyr_1224 0.88 -0.9 1,383,584 + Psyr_1224 0.88 -0.3 1,383,584 + Psyr_1224 0.88 +0.8 1,383,585 - Psyr_1224 0.88 -0.3 1,383,585 - Psyr_1224 0.88 +2.7 1,383,585 - Psyr_1224 0.88 -0.4 1,383,585 - Psyr_1224 0.88 +0.6 1,383,585 - Psyr_1224 0.88 -0.9 1,383,585 - Psyr_1224 0.88 +1.5 1,383,585 - Psyr_1224 0.88 -0.2 1,383,585 - Psyr_1224 0.88 -0.3 1,383,585 - Psyr_1224 0.88 +0.2 1,383,654 + -0.3 1,383,655 - -1.9 1,383,655 - -0.6 1,383,659 - +0.2 1,383,726 + +0.8 1,383,727 - -0.4 1,383,727 - -0.1 1,383,760 - +0.9 1,383,816 + Psyr_1225 0.19 -0.4 1,384,025 + Psyr_1225 0.65 -1.2 1,384,025 + Psyr_1225 0.65 +0.1 1,384,026 - Psyr_1225 0.66 -1.5 1,384,048 + Psyr_1225 0.70 +0.3 1,384,048 + Psyr_1225 0.70 -0.1 1,384,048 + Psyr_1225 0.70 +1.3 1,384,061 + Psyr_1225 0.73 -0.2 1,384,061 + Psyr_1225 0.73 -0.3 1,384,061 + Psyr_1225 0.73 +0.9 1,384,062 - Psyr_1225 0.74 -2.7 1,384,062 - Psyr_1225 0.74 -0.9 1,384,186 + +0.5 1,384,186 + +0.2 1,384,186 + -2.0 1,384,186 + -1.3 1,384,186 + +1.5 1,384,186 + -0.2 1,384,186 + -0.3 1,384,186 + +0.1 1,384,186 + -0.9 1,384,186 + -0.9 1,384,187 - -0.4 1,384,187 - +0.7 1,384,187 - -0.3 1,384,187 - +0.2 1,384,187 - -1.0 1,384,187 - -0.3 1,384,187 - +1.1 1,384,188 + -0.3 1,384,188 + +0.4 1,384,188 + -0.0 1,384,188 + +0.8 1,384,189 - -0.1 1,384,189 - -2.6 1,384,295 + +1.7 1,384,295 + +0.4 1,384,295 + +0.1 1,384,295 + +1.1 1,384,295 + +0.9 1,384,295 + -0.3 1,384,296 - -2.3 1,384,296 - -0.3 1,384,296 - -0.9 1,384,296 - -0.7 1,384,298 + +1.5 1,384,299 - -0.1 1,384,394 + +0.6 1,384,395 - -0.0 1,384,399 + -0.2 1,384,400 - +1.4 1,384,429 + +0.9 1,384,430 - +0.2 1,384,430 - -0.0 1,384,430 - -0.8 1,384,457 + -0.2 1,384,482 + +1.0 1,384,482 + +0.1 1,384,601 - -0.2 1,384,601 - +1.3 1,384,601 - -1.9 1,384,753 - Psyr_1226 0.44 +0.2 1,384,777 - Psyr_1226 0.51 -0.4 1,384,890 + Psyr_1226 0.83 +0.9 1,384,897 + Psyr_1226 0.85 -0.3 1,384,898 - Psyr_1226 0.85 +0.3 1,385,032 + +1.8 1,385,032 + +1.5 1,385,032 + -1.7 1,385,033 - -0.3 1,385,033 - -0.1 1,385,033 - -1.3 1,385,041 + -3.5 1,385,042 - -0.3 1,385,042 - -1.5 1,385,052 + +0.0 1,385,052 + +0.5 1,385,052 + -0.4 1,385,053 - -1.3 1,385,053 - -1.8 1,385,053 - -0.7 1,385,148 + -0.8 1,385,149 - -0.7 1,385,149 - +2.2 1,385,149 - -0.6 1,385,149 - +1.2 1,385,149 - -0.6 1,385,149 - -0.6 1,385,149 - +0.2 1,385,149 - -0.3 1,385,149 - +0.4 1,385,149 - -2.7 1,385,149 - +0.7 1,385,149 - -0.3 1,385,149 - -2.4 1,385,149 - -0.6
Or see this region's nucleotide sequence