Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0964

Experiment: KB with Solanesol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0963 and Psyr_0964 are separated by 123 nucleotidesPsyr_0964 and Psyr_0965 overlap by 4 nucleotides Psyr_0963: Psyr_0963 - Protein of unknown function DUF523, at 1,097,002 to 1,097,958 _0963 Psyr_0964: Psyr_0964 - conserved hypothetical protein, at 1,098,082 to 1,098,297 _0964 Psyr_0965: Psyr_0965 - amine oxidase, flavin-containing, at 1,098,294 to 1,099,280 _0965 Position (kb) 1098 1099Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1097.185 kb on - strand, within Psyr_0963at 1097.185 kb on - strand, within Psyr_0963at 1097.201 kb on + strand, within Psyr_0963at 1097.283 kb on - strand, within Psyr_0963at 1097.283 kb on - strand, within Psyr_0963at 1097.283 kb on - strand, within Psyr_0963at 1097.283 kb on - strand, within Psyr_0963at 1097.283 kb on - strand, within Psyr_0963at 1097.348 kb on + strand, within Psyr_0963at 1097.348 kb on + strand, within Psyr_0963at 1097.348 kb on + strand, within Psyr_0963at 1097.348 kb on + strand, within Psyr_0963at 1097.348 kb on + strand, within Psyr_0963at 1097.348 kb on + strand, within Psyr_0963at 1097.348 kb on + strandat 1097.348 kb on + strand, within Psyr_0963at 1097.348 kb on + strand, within Psyr_0963at 1097.348 kb on + strand, within Psyr_0963at 1097.349 kb on - strand, within Psyr_0963at 1097.349 kb on - strand, within Psyr_0963at 1097.349 kb on - strand, within Psyr_0963at 1097.349 kb on - strand, within Psyr_0963at 1097.349 kb on - strand, within Psyr_0963at 1097.349 kb on - strand, within Psyr_0963at 1097.349 kb on - strand, within Psyr_0963at 1097.349 kb on - strand, within Psyr_0963at 1097.349 kb on - strand, within Psyr_0963at 1097.349 kb on - strand, within Psyr_0963at 1097.384 kb on + strand, within Psyr_0963at 1097.453 kb on + strand, within Psyr_0963at 1097.558 kb on + strand, within Psyr_0963at 1097.558 kb on + strand, within Psyr_0963at 1097.558 kb on + strand, within Psyr_0963at 1097.558 kb on + strand, within Psyr_0963at 1097.558 kb on + strand, within Psyr_0963at 1097.558 kb on + strand, within Psyr_0963at 1097.559 kb on - strand, within Psyr_0963at 1097.559 kb on - strand, within Psyr_0963at 1097.559 kb on - strand, within Psyr_0963at 1097.559 kb on - strand, within Psyr_0963at 1097.559 kb on - strand, within Psyr_0963at 1097.559 kb on - strand, within Psyr_0963at 1097.559 kb on - strand, within Psyr_0963at 1097.559 kb on - strand, within Psyr_0963at 1097.559 kb on - strand, within Psyr_0963at 1097.654 kb on + strand, within Psyr_0963at 1097.655 kb on - strand, within Psyr_0963at 1097.689 kb on + strand, within Psyr_0963at 1097.689 kb on + strand, within Psyr_0963at 1097.689 kb on + strand, within Psyr_0963at 1097.689 kb on + strand, within Psyr_0963at 1097.690 kb on - strand, within Psyr_0963at 1097.690 kb on - strand, within Psyr_0963at 1097.690 kb on - strand, within Psyr_0963at 1097.843 kb on + strand, within Psyr_0963at 1097.843 kb on + strand, within Psyr_0963at 1097.844 kb on - strand, within Psyr_0963at 1097.862 kb on + strand, within Psyr_0963at 1097.863 kb on - strandat 1097.863 kb on - strandat 1097.975 kb on + strandat 1097.994 kb on + strandat 1098.006 kb on + strandat 1098.032 kb on + strandat 1098.032 kb on + strandat 1098.032 kb on + strandat 1098.032 kb on + strandat 1098.033 kb on - strandat 1098.033 kb on - strandat 1098.033 kb on - strandat 1098.033 kb on - strandat 1098.038 kb on + strandat 1098.039 kb on - strandat 1098.039 kb on - strandat 1098.057 kb on - strandat 1098.083 kb on + strandat 1098.083 kb on + strandat 1098.084 kb on - strandat 1098.105 kb on + strand, within Psyr_0964at 1098.105 kb on + strand, within Psyr_0964at 1098.105 kb on + strand, within Psyr_0964at 1098.105 kb on + strand, within Psyr_0964at 1098.105 kb on + strand, within Psyr_0964at 1098.105 kb on + strand, within Psyr_0964at 1098.105 kb on + strand, within Psyr_0964at 1098.105 kb on + strand, within Psyr_0964at 1098.105 kb on + strand, within Psyr_0964at 1098.105 kb on + strand, within Psyr_0964at 1098.105 kb on + strand, within Psyr_0964at 1098.106 kb on - strand, within Psyr_0964at 1098.106 kb on - strand, within Psyr_0964at 1098.106 kb on - strand, within Psyr_0964at 1098.106 kb on - strand, within Psyr_0964at 1098.106 kb on - strand, within Psyr_0964at 1098.106 kb on - strand, within Psyr_0964at 1098.172 kb on + strand, within Psyr_0964at 1098.172 kb on + strand, within Psyr_0964at 1098.172 kb on + strand, within Psyr_0964at 1098.172 kb on + strand, within Psyr_0964at 1098.388 kb on + strandat 1098.388 kb on + strandat 1098.388 kb on + strandat 1098.388 kb on + strandat 1098.389 kb on - strandat 1098.389 kb on - strandat 1098.389 kb on - strandat 1098.389 kb on - strandat 1098.389 kb on - strandat 1098.389 kb on - strandat 1098.389 kb on - strandat 1098.389 kb on - strandat 1098.448 kb on + strand, within Psyr_0965at 1098.448 kb on + strand, within Psyr_0965at 1098.448 kb on + strand, within Psyr_0965at 1098.449 kb on - strand, within Psyr_0965at 1098.449 kb on - strand, within Psyr_0965at 1098.449 kb on - strand, within Psyr_0965at 1098.449 kb on - strand, within Psyr_0965at 1098.600 kb on - strand, within Psyr_0965at 1098.948 kb on - strand, within Psyr_0965at 1099.024 kb on + strand, within Psyr_0965at 1099.024 kb on + strand, within Psyr_0965at 1099.111 kb on + strand, within Psyr_0965at 1099.111 kb on + strand, within Psyr_0965at 1099.112 kb on - strand, within Psyr_0965at 1099.112 kb on - strand, within Psyr_0965at 1099.112 kb on - strand, within Psyr_0965at 1099.160 kb on + strand, within Psyr_0965at 1099.160 kb on + strand, within Psyr_0965at 1099.160 kb on + strand, within Psyr_0965at 1099.160 kb on + strand, within Psyr_0965at 1099.160 kb on + strand, within Psyr_0965at 1099.160 kb on + strand, within Psyr_0965at 1099.160 kb on + strand, within Psyr_0965at 1099.161 kb on - strand, within Psyr_0965at 1099.161 kb on - strand, within Psyr_0965at 1099.218 kb on - strandat 1099.280 kb on + strandat 1099.280 kb on + strandat 1099.281 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Solanesol 10 mM
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1,097,185 - Psyr_0963 0.19 +1.2
1,097,185 - Psyr_0963 0.19 +1.2
1,097,201 + Psyr_0963 0.21 -0.8
1,097,283 - Psyr_0963 0.29 -1.3
1,097,283 - Psyr_0963 0.29 +0.2
1,097,283 - Psyr_0963 0.29 -0.0
1,097,283 - Psyr_0963 0.29 -0.5
1,097,283 - Psyr_0963 0.29 +1.1
1,097,348 + Psyr_0963 0.36 +1.0
1,097,348 + Psyr_0963 0.36 +0.4
1,097,348 + Psyr_0963 0.36 +1.5
1,097,348 + Psyr_0963 0.36 -0.8
1,097,348 + Psyr_0963 0.36 -0.4
1,097,348 + Psyr_0963 0.36 +0.1
1,097,348 + +2.7
1,097,348 + Psyr_0963 0.36 +0.2
1,097,348 + Psyr_0963 0.36 -0.1
1,097,348 + Psyr_0963 0.36 +1.7
1,097,349 - Psyr_0963 0.36 +0.6
1,097,349 - Psyr_0963 0.36 -1.0
1,097,349 - Psyr_0963 0.36 +0.3
1,097,349 - Psyr_0963 0.36 -0.3
1,097,349 - Psyr_0963 0.36 +0.5
1,097,349 - Psyr_0963 0.36 +1.5
1,097,349 - Psyr_0963 0.36 -1.7
1,097,349 - Psyr_0963 0.36 +1.7
1,097,349 - Psyr_0963 0.36 +0.2
1,097,349 - Psyr_0963 0.36 -0.6
1,097,384 + Psyr_0963 0.40 +4.7
1,097,453 + Psyr_0963 0.47 +0.1
1,097,558 + Psyr_0963 0.58 +0.8
1,097,558 + Psyr_0963 0.58 +0.2
1,097,558 + Psyr_0963 0.58 +0.7
1,097,558 + Psyr_0963 0.58 -1.1
1,097,558 + Psyr_0963 0.58 -1.0
1,097,558 + Psyr_0963 0.58 +1.9
1,097,559 - Psyr_0963 0.58 -1.9
1,097,559 - Psyr_0963 0.58 -0.9
1,097,559 - Psyr_0963 0.58 +0.5
1,097,559 - Psyr_0963 0.58 -0.4
1,097,559 - Psyr_0963 0.58 -1.6
1,097,559 - Psyr_0963 0.58 +1.1
1,097,559 - Psyr_0963 0.58 -1.8
1,097,559 - Psyr_0963 0.58 +1.0
1,097,559 - Psyr_0963 0.58 -0.5
1,097,654 + Psyr_0963 0.68 +1.1
1,097,655 - Psyr_0963 0.68 +0.2
1,097,689 + Psyr_0963 0.72 -0.0
1,097,689 + Psyr_0963 0.72 -0.3
1,097,689 + Psyr_0963 0.72 +0.2
1,097,689 + Psyr_0963 0.72 -0.3
1,097,690 - Psyr_0963 0.72 +0.0
1,097,690 - Psyr_0963 0.72 +1.1
1,097,690 - Psyr_0963 0.72 +0.4
1,097,843 + Psyr_0963 0.88 +1.1
1,097,843 + Psyr_0963 0.88 -0.5
1,097,844 - Psyr_0963 0.88 -1.3
1,097,862 + Psyr_0963 0.90 +0.1
1,097,863 - -1.0
1,097,863 - +0.8
1,097,975 + -0.7
1,097,994 + +0.8
1,098,006 + +0.5
1,098,032 + -0.6
1,098,032 + -0.3
1,098,032 + -0.2
1,098,032 + +1.3
1,098,033 - +0.7
1,098,033 - -0.5
1,098,033 - -0.4
1,098,033 - +0.9
1,098,038 + -0.1
1,098,039 - +1.6
1,098,039 - +1.7
1,098,057 - +0.5
1,098,083 + +0.0
1,098,083 + -0.6
1,098,084 - +0.7
1,098,105 + Psyr_0964 0.11 -0.0
1,098,105 + Psyr_0964 0.11 -1.8
1,098,105 + Psyr_0964 0.11 +0.3
1,098,105 + Psyr_0964 0.11 +0.3
1,098,105 + Psyr_0964 0.11 -2.2
1,098,105 + Psyr_0964 0.11 -0.6
1,098,105 + Psyr_0964 0.11 -0.3
1,098,105 + Psyr_0964 0.11 +0.3
1,098,105 + Psyr_0964 0.11 -0.5
1,098,105 + Psyr_0964 0.11 +0.3
1,098,105 + Psyr_0964 0.11 -0.9
1,098,106 - Psyr_0964 0.11 -0.2
1,098,106 - Psyr_0964 0.11 -0.5
1,098,106 - Psyr_0964 0.11 +0.1
1,098,106 - Psyr_0964 0.11 -1.5
1,098,106 - Psyr_0964 0.11 -0.3
1,098,106 - Psyr_0964 0.11 -1.3
1,098,172 + Psyr_0964 0.42 +1.1
1,098,172 + Psyr_0964 0.42 +0.1
1,098,172 + Psyr_0964 0.42 +0.1
1,098,172 + Psyr_0964 0.42 -2.3
1,098,388 + -0.0
1,098,388 + -0.0
1,098,388 + -0.9
1,098,388 + +1.9
1,098,389 - -0.7
1,098,389 - -0.5
1,098,389 - -0.1
1,098,389 - -0.6
1,098,389 - -0.4
1,098,389 - -0.3
1,098,389 - -0.1
1,098,389 - -0.3
1,098,448 + Psyr_0965 0.16 +0.4
1,098,448 + Psyr_0965 0.16 -1.7
1,098,448 + Psyr_0965 0.16 -0.5
1,098,449 - Psyr_0965 0.16 -0.8
1,098,449 - Psyr_0965 0.16 -0.3
1,098,449 - Psyr_0965 0.16 +0.3
1,098,449 - Psyr_0965 0.16 -1.2
1,098,600 - Psyr_0965 0.31 +0.3
1,098,948 - Psyr_0965 0.66 -0.1
1,099,024 + Psyr_0965 0.74 +0.0
1,099,024 + Psyr_0965 0.74 -1.0
1,099,111 + Psyr_0965 0.83 -0.5
1,099,111 + Psyr_0965 0.83 -1.2
1,099,112 - Psyr_0965 0.83 +0.2
1,099,112 - Psyr_0965 0.83 +0.9
1,099,112 - Psyr_0965 0.83 +1.4
1,099,160 + Psyr_0965 0.88 -0.6
1,099,160 + Psyr_0965 0.88 +2.8
1,099,160 + Psyr_0965 0.88 +0.4
1,099,160 + Psyr_0965 0.88 +0.1
1,099,160 + Psyr_0965 0.88 +0.4
1,099,160 + Psyr_0965 0.88 -0.2
1,099,160 + Psyr_0965 0.88 +0.0
1,099,161 - Psyr_0965 0.88 +0.4
1,099,161 - Psyr_0965 0.88 +0.8
1,099,218 - -1.0
1,099,280 + -0.1
1,099,280 + +0.7
1,099,281 - +2.1

Or see this region's nucleotide sequence