Experiment: KB with Solanesol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0876 and Psyr_0877 are separated by 24 nucleotides Psyr_0877 and Psyr_0878 are separated by 64 nucleotides Psyr_0878 and Psyr_0879 are separated by 54 nucleotides Psyr_0879 and Psyr_0880 are separated by 250 nucleotides
Psyr_0876: Psyr_0876 - TonB-dependent receptor:TonB-dependent receptor, C-terminal, at 997,800 to 1,000,082
_0876
Psyr_0877: Psyr_0877 - outer membrane transport energization protein ExbB, at 1,000,107 to 1,000,757
_0877
Psyr_0878: Psyr_0878 - Phospholipase D/Transphosphatidylase, at 1,000,822 to 1,002,063
_0878
Psyr_0879: Psyr_0879 - GCN5-related N-acetyltransferase, at 1,002,118 to 1,002,603
_0879
Psyr_0880: Psyr_0880 - MltA:3D, at 1,002,854 to 1,004,065
_0880
Position (kb) 1000
1001
1002
1003 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 999.878 kb on + strand at 999.878 kb on + strand at 999.878 kb on + strand at 999.878 kb on + strand at 999.878 kb on + strand at 999.878 kb on + strand at 999.878 kb on + strand at 999.878 kb on + strand at 999.879 kb on - strand at 999.879 kb on - strand at 999.879 kb on - strand at 999.879 kb on - strand at 999.879 kb on - strand at 999.882 kb on + strand at 999.882 kb on + strand at 999.882 kb on + strand at 999.883 kb on - strand at 999.883 kb on - strand at 999.883 kb on - strand at 999.883 kb on - strand at 999.883 kb on - strand at 999.883 kb on - strand at 999.883 kb on - strand at 999.883 kb on - strand at 999.957 kb on + strand at 999.958 kb on - strand at 999.972 kb on + strand at 999.972 kb on + strand at 999.973 kb on - strand at 999.973 kb on - strand at 999.973 kb on - strand at 999.999 kb on + strand at 999.999 kb on + strand at 999.999 kb on + strand at 999.999 kb on + strand at 999.999 kb on + strand at 1000.000 kb on - strand at 1000.000 kb on - strand at 1000.000 kb on - strand at 1000.000 kb on - strand at 1000.029 kb on + strand at 1000.029 kb on + strand at 1000.029 kb on + strand at 1000.029 kb on + strand at 1000.030 kb on - strand at 1000.030 kb on - strand at 1000.030 kb on - strand at 1000.140 kb on + strand at 1000.140 kb on + strand at 1000.140 kb on + strand at 1000.140 kb on + strand at 1000.140 kb on + strand at 1000.140 kb on + strand at 1000.140 kb on + strand at 1000.140 kb on + strand at 1000.141 kb on - strand at 1000.141 kb on - strand at 1000.141 kb on - strand at 1000.149 kb on + strand at 1000.149 kb on + strand at 1000.149 kb on + strand at 1000.150 kb on - strand at 1000.150 kb on - strand at 1000.150 kb on - strand at 1000.150 kb on - strand at 1000.150 kb on - strand at 1000.150 kb on - strand at 1000.166 kb on - strand at 1000.197 kb on + strand, within Psyr_0877 at 1000.197 kb on + strand, within Psyr_0877 at 1000.197 kb on + strand, within Psyr_0877 at 1000.197 kb on + strand, within Psyr_0877 at 1000.197 kb on + strand, within Psyr_0877 at 1000.197 kb on + strand, within Psyr_0877 at 1000.198 kb on - strand, within Psyr_0877 at 1000.198 kb on - strand, within Psyr_0877 at 1000.198 kb on - strand, within Psyr_0877 at 1000.198 kb on - strand, within Psyr_0877 at 1000.198 kb on - strand, within Psyr_0877 at 1000.206 kb on + strand, within Psyr_0877 at 1000.206 kb on + strand, within Psyr_0877 at 1000.207 kb on - strand, within Psyr_0877 at 1000.207 kb on - strand, within Psyr_0877 at 1000.207 kb on - strand, within Psyr_0877 at 1000.207 kb on - strand, within Psyr_0877 at 1000.389 kb on + strand, within Psyr_0877 at 1000.389 kb on + strand, within Psyr_0877 at 1000.623 kb on + strand, within Psyr_0877 at 1000.623 kb on + strand, within Psyr_0877 at 1000.623 kb on + strand, within Psyr_0877 at 1000.623 kb on + strand, within Psyr_0877 at 1000.623 kb on + strand, within Psyr_0877 at 1000.623 kb on + strand, within Psyr_0877 at 1000.624 kb on - strand, within Psyr_0877 at 1000.624 kb on - strand, within Psyr_0877 at 1000.624 kb on - strand, within Psyr_0877 at 1000.624 kb on - strand, within Psyr_0877 at 1000.832 kb on - strand at 1000.840 kb on + strand at 1000.840 kb on + strand at 1000.841 kb on - strand at 1000.841 kb on - strand at 1000.884 kb on - strand at 1000.940 kb on + strand at 1000.940 kb on + strand at 1000.940 kb on + strand at 1000.940 kb on + strand at 1000.940 kb on + strand at 1000.940 kb on + strand at 1000.941 kb on - strand at 1000.941 kb on - strand at 1000.941 kb on - strand at 1000.944 kb on + strand at 1000.944 kb on + strand at 1000.944 kb on + strand at 1000.944 kb on + strand at 1000.944 kb on + strand at 1000.944 kb on + strand at 1000.945 kb on - strand at 1000.945 kb on - strand at 1001.053 kb on + strand, within Psyr_0878 at 1001.053 kb on + strand, within Psyr_0878 at 1001.053 kb on + strand, within Psyr_0878 at 1001.053 kb on + strand, within Psyr_0878 at 1001.054 kb on - strand, within Psyr_0878 at 1001.054 kb on - strand, within Psyr_0878 at 1001.230 kb on + strand, within Psyr_0878 at 1001.397 kb on - strand, within Psyr_0878 at 1001.491 kb on + strand, within Psyr_0878 at 1001.491 kb on + strand, within Psyr_0878 at 1001.491 kb on + strand, within Psyr_0878 at 1001.491 kb on + strand, within Psyr_0878 at 1001.491 kb on + strand, within Psyr_0878 at 1001.491 kb on + strand, within Psyr_0878 at 1001.492 kb on - strand, within Psyr_0878 at 1001.492 kb on - strand, within Psyr_0878 at 1001.515 kb on + strand, within Psyr_0878 at 1001.515 kb on + strand, within Psyr_0878 at 1001.515 kb on + strand, within Psyr_0878 at 1001.515 kb on + strand, within Psyr_0878 at 1001.516 kb on - strand, within Psyr_0878 at 1001.606 kb on - strand, within Psyr_0878 at 1001.645 kb on - strand, within Psyr_0878 at 1001.647 kb on + strand, within Psyr_0878 at 1001.647 kb on + strand, within Psyr_0878 at 1001.647 kb on + strand, within Psyr_0878 at 1001.648 kb on - strand, within Psyr_0878 at 1001.827 kb on + strand, within Psyr_0878 at 1001.828 kb on - strand, within Psyr_0878 at 1001.859 kb on + strand, within Psyr_0878 at 1001.860 kb on - strand, within Psyr_0878 at 1002.004 kb on + strand at 1002.005 kb on - strand at 1002.005 kb on - strand at 1002.068 kb on - strand at 1002.068 kb on - strand at 1002.068 kb on - strand at 1002.103 kb on - strand at 1002.171 kb on + strand, within Psyr_0879 at 1002.171 kb on + strand, within Psyr_0879 at 1002.171 kb on + strand, within Psyr_0879 at 1002.171 kb on + strand, within Psyr_0879 at 1002.172 kb on - strand, within Psyr_0879 at 1002.172 kb on - strand, within Psyr_0879 at 1002.172 kb on - strand, within Psyr_0879 at 1002.172 kb on - strand, within Psyr_0879 at 1002.172 kb on - strand, within Psyr_0879 at 1002.210 kb on + strand, within Psyr_0879 at 1002.211 kb on - strand, within Psyr_0879 at 1002.211 kb on - strand, within Psyr_0879 at 1002.237 kb on - strand, within Psyr_0879 at 1002.322 kb on + strand, within Psyr_0879 at 1002.350 kb on + strand, within Psyr_0879 at 1002.350 kb on + strand, within Psyr_0879 at 1002.350 kb on + strand, within Psyr_0879 at 1002.350 kb on + strand, within Psyr_0879 at 1002.350 kb on + strand, within Psyr_0879 at 1002.350 kb on + strand, within Psyr_0879 at 1002.350 kb on + strand, within Psyr_0879 at 1002.350 kb on + strand, within Psyr_0879 at 1002.351 kb on - strand, within Psyr_0879 at 1002.351 kb on - strand, within Psyr_0879 at 1002.351 kb on - strand, within Psyr_0879 at 1002.351 kb on - strand, within Psyr_0879 at 1002.351 kb on - strand, within Psyr_0879 at 1002.351 kb on - strand, within Psyr_0879 at 1002.410 kb on + strand, within Psyr_0879 at 1002.452 kb on + strand, within Psyr_0879 at 1002.453 kb on - strand, within Psyr_0879 at 1002.453 kb on - strand, within Psyr_0879 at 1002.468 kb on + strand, within Psyr_0879 at 1002.495 kb on + strand, within Psyr_0879 at 1002.505 kb on + strand, within Psyr_0879 at 1002.506 kb on - strand, within Psyr_0879 at 1002.506 kb on - strand, within Psyr_0879 at 1002.506 kb on - strand, within Psyr_0879 at 1002.506 kb on - strand, within Psyr_0879 at 1002.527 kb on + strand, within Psyr_0879 at 1002.527 kb on + strand, within Psyr_0879 at 1002.528 kb on - strand, within Psyr_0879 at 1002.568 kb on + strand at 1002.568 kb on + strand at 1002.569 kb on - strand at 1002.569 kb on - strand at 1002.569 kb on - strand at 1002.569 kb on - strand at 1002.569 kb on - strand at 1002.572 kb on + strand at 1002.572 kb on + strand at 1002.572 kb on + strand at 1002.572 kb on + strand at 1002.572 kb on + strand at 1002.572 kb on + strand at 1002.572 kb on + strand at 1002.573 kb on - strand at 1002.573 kb on - strand at 1002.573 kb on - strand at 1002.611 kb on + strand at 1002.648 kb on + strand at 1002.649 kb on - strand at 1002.736 kb on - strand at 1002.736 kb on - strand at 1002.834 kb on + strand at 1002.834 kb on + strand at 1002.986 kb on + strand, within Psyr_0880 at 1002.986 kb on + strand, within Psyr_0880 at 1002.986 kb on + strand, within Psyr_0880 at 1002.986 kb on + strand, within Psyr_0880 at 1002.986 kb on + strand, within Psyr_0880 at 1002.986 kb on + strand, within Psyr_0880 at 1002.986 kb on + strand, within Psyr_0880 at 1002.986 kb on + strand, within Psyr_0880 at 1002.986 kb on + strand, within Psyr_0880 at 1002.986 kb on + strand, within Psyr_0880 at 1002.986 kb on + strand, within Psyr_0880 at 1002.986 kb on + strand, within Psyr_0880 at 1002.986 kb on + strand, within Psyr_0880 at 1002.987 kb on - strand, within Psyr_0880 at 1002.987 kb on - strand, within Psyr_0880 at 1002.987 kb on - strand, within Psyr_0880 at 1002.987 kb on - strand, within Psyr_0880 at 1002.987 kb on - strand, within Psyr_0880 at 1002.987 kb on - strand, within Psyr_0880 at 1002.987 kb on - strand, within Psyr_0880 at 1002.987 kb on - strand, within Psyr_0880 at 1002.988 kb on + strand, within Psyr_0880
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Solanesol 10 mM remove 999,878 + +0.3 999,878 + -0.0 999,878 + -1.1 999,878 + +1.4 999,878 + +0.4 999,878 + -2.0 999,878 + +0.5 999,878 + +1.9 999,879 - -3.8 999,879 - +0.4 999,879 - +1.6 999,879 - -0.9 999,879 - +0.5 999,882 + +0.9 999,882 + +0.6 999,882 + +0.9 999,883 - +1.1 999,883 - -1.3 999,883 - +0.3 999,883 - +0.0 999,883 - -0.0 999,883 - +0.1 999,883 - -1.7 999,883 - -0.1 999,957 + -0.0 999,958 - -0.1 999,972 + -0.5 999,972 + +2.3 999,973 - +1.0 999,973 - +0.3 999,973 - +0.5 999,999 + -0.5 999,999 + +0.0 999,999 + -1.0 999,999 + +0.8 999,999 + +1.0 1,000,000 - -1.0 1,000,000 - -1.2 1,000,000 - -0.7 1,000,000 - -1.1 1,000,029 + -0.8 1,000,029 + -0.1 1,000,029 + +0.2 1,000,029 + -1.6 1,000,030 - +0.8 1,000,030 - +0.5 1,000,030 - +0.8 1,000,140 + +0.3 1,000,140 + +0.2 1,000,140 + -0.0 1,000,140 + +0.4 1,000,140 + -0.0 1,000,140 + -0.6 1,000,140 + +0.1 1,000,140 + +1.0 1,000,141 - -0.1 1,000,141 - +0.9 1,000,141 - +1.7 1,000,149 + +0.3 1,000,149 + +0.1 1,000,149 + -0.4 1,000,150 - +0.2 1,000,150 - +1.9 1,000,150 - -3.0 1,000,150 - -1.0 1,000,150 - -1.3 1,000,150 - -1.2 1,000,166 - +0.2 1,000,197 + Psyr_0877 0.14 +0.2 1,000,197 + Psyr_0877 0.14 +1.2 1,000,197 + Psyr_0877 0.14 +0.1 1,000,197 + Psyr_0877 0.14 -1.2 1,000,197 + Psyr_0877 0.14 +0.2 1,000,197 + Psyr_0877 0.14 -2.1 1,000,198 - Psyr_0877 0.14 +0.6 1,000,198 - Psyr_0877 0.14 +0.3 1,000,198 - Psyr_0877 0.14 +0.4 1,000,198 - Psyr_0877 0.14 +0.4 1,000,198 - Psyr_0877 0.14 +0.3 1,000,206 + Psyr_0877 0.15 +0.1 1,000,206 + Psyr_0877 0.15 +0.7 1,000,207 - Psyr_0877 0.15 +2.0 1,000,207 - Psyr_0877 0.15 +3.1 1,000,207 - Psyr_0877 0.15 -0.1 1,000,207 - Psyr_0877 0.15 +1.8 1,000,389 + Psyr_0877 0.43 +0.8 1,000,389 + Psyr_0877 0.43 -0.6 1,000,623 + Psyr_0877 0.79 -0.5 1,000,623 + Psyr_0877 0.79 +1.7 1,000,623 + Psyr_0877 0.79 -0.9 1,000,623 + Psyr_0877 0.79 -0.1 1,000,623 + Psyr_0877 0.79 -0.1 1,000,623 + Psyr_0877 0.79 +1.1 1,000,624 - Psyr_0877 0.79 +0.5 1,000,624 - Psyr_0877 0.79 +1.8 1,000,624 - Psyr_0877 0.79 +0.4 1,000,624 - Psyr_0877 0.79 -0.1 1,000,832 - +1.7 1,000,840 + -0.7 1,000,840 + +1.5 1,000,841 - -0.3 1,000,841 - +0.1 1,000,884 - -0.7 1,000,940 + +0.0 1,000,940 + -0.4 1,000,940 + -2.0 1,000,940 + +0.1 1,000,940 + +0.1 1,000,940 + -0.3 1,000,941 - +1.7 1,000,941 - -0.1 1,000,941 - +0.4 1,000,944 + -0.4 1,000,944 + +1.1 1,000,944 + -0.6 1,000,944 + +1.9 1,000,944 + +0.7 1,000,944 + -1.5 1,000,945 - +3.9 1,000,945 - +0.5 1,001,053 + Psyr_0878 0.19 -2.5 1,001,053 + Psyr_0878 0.19 -0.5 1,001,053 + Psyr_0878 0.19 +0.7 1,001,053 + Psyr_0878 0.19 +2.5 1,001,054 - Psyr_0878 0.19 -0.6 1,001,054 - Psyr_0878 0.19 +0.1 1,001,230 + Psyr_0878 0.33 +0.1 1,001,397 - Psyr_0878 0.46 -1.1 1,001,491 + Psyr_0878 0.54 +1.8 1,001,491 + Psyr_0878 0.54 -1.5 1,001,491 + Psyr_0878 0.54 +0.6 1,001,491 + Psyr_0878 0.54 -0.0 1,001,491 + Psyr_0878 0.54 -1.1 1,001,491 + Psyr_0878 0.54 -2.8 1,001,492 - Psyr_0878 0.54 -0.7 1,001,492 - Psyr_0878 0.54 +0.3 1,001,515 + Psyr_0878 0.56 +0.1 1,001,515 + Psyr_0878 0.56 +0.4 1,001,515 + Psyr_0878 0.56 -1.1 1,001,515 + Psyr_0878 0.56 -0.6 1,001,516 - Psyr_0878 0.56 -0.9 1,001,606 - Psyr_0878 0.63 +0.2 1,001,645 - Psyr_0878 0.66 -0.3 1,001,647 + Psyr_0878 0.66 -0.8 1,001,647 + Psyr_0878 0.66 -0.5 1,001,647 + Psyr_0878 0.66 +0.7 1,001,648 - Psyr_0878 0.67 -0.2 1,001,827 + Psyr_0878 0.81 -0.0 1,001,828 - Psyr_0878 0.81 +0.3 1,001,859 + Psyr_0878 0.83 -1.3 1,001,860 - Psyr_0878 0.84 -1.9 1,002,004 + +1.1 1,002,005 - +0.4 1,002,005 - +0.9 1,002,068 - -1.4 1,002,068 - +1.5 1,002,068 - -1.2 1,002,103 - +2.5 1,002,171 + Psyr_0879 0.11 -2.3 1,002,171 + Psyr_0879 0.11 +0.1 1,002,171 + Psyr_0879 0.11 -1.7 1,002,171 + Psyr_0879 0.11 -1.9 1,002,172 - Psyr_0879 0.11 -0.2 1,002,172 - Psyr_0879 0.11 +1.7 1,002,172 - Psyr_0879 0.11 -3.0 1,002,172 - Psyr_0879 0.11 -1.5 1,002,172 - Psyr_0879 0.11 +0.1 1,002,210 + Psyr_0879 0.19 -2.7 1,002,211 - Psyr_0879 0.19 +1.3 1,002,211 - Psyr_0879 0.19 -0.4 1,002,237 - Psyr_0879 0.24 -3.1 1,002,322 + Psyr_0879 0.42 -3.5 1,002,350 + Psyr_0879 0.48 +0.8 1,002,350 + Psyr_0879 0.48 -2.9 1,002,350 + Psyr_0879 0.48 -0.6 1,002,350 + Psyr_0879 0.48 -0.3 1,002,350 + Psyr_0879 0.48 +0.6 1,002,350 + Psyr_0879 0.48 +1.1 1,002,350 + Psyr_0879 0.48 -0.2 1,002,350 + Psyr_0879 0.48 +1.9 1,002,351 - Psyr_0879 0.48 -0.4 1,002,351 - Psyr_0879 0.48 -1.7 1,002,351 - Psyr_0879 0.48 +0.0 1,002,351 - Psyr_0879 0.48 -0.3 1,002,351 - Psyr_0879 0.48 +0.7 1,002,351 - Psyr_0879 0.48 -1.3 1,002,410 + Psyr_0879 0.60 +1.0 1,002,452 + Psyr_0879 0.69 -0.0 1,002,453 - Psyr_0879 0.69 -2.3 1,002,453 - Psyr_0879 0.69 -2.0 1,002,468 + Psyr_0879 0.72 +0.8 1,002,495 + Psyr_0879 0.78 -0.5 1,002,505 + Psyr_0879 0.80 -1.0 1,002,506 - Psyr_0879 0.80 -1.1 1,002,506 - Psyr_0879 0.80 -2.0 1,002,506 - Psyr_0879 0.80 +1.3 1,002,506 - Psyr_0879 0.80 +0.6 1,002,527 + Psyr_0879 0.84 +1.5 1,002,527 + Psyr_0879 0.84 -3.6 1,002,528 - Psyr_0879 0.84 +0.6 1,002,568 + +2.1 1,002,568 + +0.9 1,002,569 - +2.0 1,002,569 - +0.5 1,002,569 - +0.3 1,002,569 - +1.1 1,002,569 - +0.7 1,002,572 + +0.5 1,002,572 + -0.7 1,002,572 + +1.0 1,002,572 + +0.4 1,002,572 + +1.9 1,002,572 + +1.3 1,002,572 + +1.1 1,002,573 - -0.7 1,002,573 - -0.5 1,002,573 - -1.9 1,002,611 + +1.0 1,002,648 + -0.2 1,002,649 - -1.7 1,002,736 - -0.5 1,002,736 - +0.5 1,002,834 + -1.7 1,002,834 + +0.7 1,002,986 + Psyr_0880 0.11 +0.7 1,002,986 + Psyr_0880 0.11 -0.6 1,002,986 + Psyr_0880 0.11 -0.4 1,002,986 + Psyr_0880 0.11 -0.8 1,002,986 + Psyr_0880 0.11 -1.4 1,002,986 + Psyr_0880 0.11 +0.5 1,002,986 + Psyr_0880 0.11 -0.1 1,002,986 + Psyr_0880 0.11 +0.6 1,002,986 + Psyr_0880 0.11 +1.8 1,002,986 + Psyr_0880 0.11 -2.5 1,002,986 + Psyr_0880 0.11 -0.3 1,002,986 + Psyr_0880 0.11 +0.5 1,002,986 + Psyr_0880 0.11 +1.4 1,002,987 - Psyr_0880 0.11 -1.3 1,002,987 - Psyr_0880 0.11 +1.1 1,002,987 - Psyr_0880 0.11 -0.1 1,002,987 - Psyr_0880 0.11 -1.3 1,002,987 - Psyr_0880 0.11 +0.3 1,002,987 - Psyr_0880 0.11 +0.8 1,002,987 - Psyr_0880 0.11 +0.5 1,002,987 - Psyr_0880 0.11 -0.5 1,002,988 + Psyr_0880 0.11 -0.1
Or see this region's nucleotide sequence