Experiment: KB with Solanesol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0302 and Psyr_0303 overlap by 1 nucleotides Psyr_0303 and Psyr_0304 are separated by 208 nucleotides Psyr_0304 and Psyr_0305 are separated by 0 nucleotides
Psyr_0302: Psyr_0302 - 3-octaprenyl-4hydroxybenzoate decarboxylase, at 321,695 to 323,173
_0302
Psyr_0303: Psyr_0303 - Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein, at 323,173 to 324,141
_0303
Psyr_0304: Psyr_0304 - ChaC-like protein, at 324,350 to 325,018
_0304
Psyr_0305: Psyr_0305 - GlpT transporter:Glycerol-3-phosphate transporter, at 325,019 to 326,368
_0305
Position (kb) 323
324
325 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 323.166 kb on + strand at 323.180 kb on + strand at 323.258 kb on - strand at 323.280 kb on + strand, within Psyr_0303 at 323.367 kb on + strand, within Psyr_0303 at 323.551 kb on + strand, within Psyr_0303 at 323.849 kb on - strand, within Psyr_0303 at 323.879 kb on - strand, within Psyr_0303 at 324.055 kb on + strand at 324.055 kb on + strand at 324.056 kb on - strand at 324.056 kb on - strand at 324.116 kb on + strand at 324.116 kb on + strand at 324.117 kb on - strand at 324.172 kb on + strand at 324.173 kb on - strand at 324.190 kb on + strand at 324.190 kb on + strand at 324.191 kb on - strand at 324.191 kb on - strand at 324.230 kb on + strand at 324.231 kb on - strand at 324.231 kb on - strand at 324.231 kb on - strand at 324.231 kb on - strand at 324.231 kb on - strand at 324.515 kb on + strand, within Psyr_0304 at 324.596 kb on + strand, within Psyr_0304 at 324.597 kb on - strand, within Psyr_0304 at 324.645 kb on + strand, within Psyr_0304 at 324.804 kb on + strand, within Psyr_0304 at 324.805 kb on - strand, within Psyr_0304 at 324.845 kb on + strand, within Psyr_0304 at 324.846 kb on - strand, within Psyr_0304 at 324.846 kb on - strand, within Psyr_0304 at 324.846 kb on - strand, within Psyr_0304 at 324.846 kb on - strand, within Psyr_0304
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Solanesol 10 mM remove 323,166 + +1.3 323,180 + +1.0 323,258 - -1.0 323,280 + Psyr_0303 0.11 +0.3 323,367 + Psyr_0303 0.20 -3.9 323,551 + Psyr_0303 0.39 -0.3 323,849 - Psyr_0303 0.70 -0.7 323,879 - Psyr_0303 0.73 -1.0 324,055 + -1.5 324,055 + +2.3 324,056 - -0.9 324,056 - -1.5 324,116 + +0.3 324,116 + -1.0 324,117 - -0.6 324,172 + -1.0 324,173 - +0.1 324,190 + +0.1 324,190 + -1.2 324,191 - +0.2 324,191 - -1.3 324,230 + -1.0 324,231 - +1.3 324,231 - -0.7 324,231 - -1.5 324,231 - -1.3 324,231 - -0.3 324,515 + Psyr_0304 0.25 +0.7 324,596 + Psyr_0304 0.37 +0.3 324,597 - Psyr_0304 0.37 -0.2 324,645 + Psyr_0304 0.44 -1.3 324,804 + Psyr_0304 0.68 -0.9 324,805 - Psyr_0304 0.68 +0.1 324,845 + Psyr_0304 0.74 +0.1 324,846 - Psyr_0304 0.74 +0.2 324,846 - Psyr_0304 0.74 +0.6 324,846 - Psyr_0304 0.74 +0.9 324,846 - Psyr_0304 0.74 -0.8
Or see this region's nucleotide sequence