Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0199

Experiment: KB with Solanesol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0198 and Psyr_0199 are separated by 296 nucleotidesPsyr_0199 and Psyr_0200 are separated by 62 nucleotides Psyr_0198: Psyr_0198 - Citrate transporter, at 211,908 to 213,215 _0198 Psyr_0199: Psyr_0199 - Glutathione-dependent formaldehyde-activating, GFA, at 213,512 to 213,913 _0199 Psyr_0200: Psyr_0200 - conserved hypothetical protein, at 213,976 to 215,373 _0200 Position (kb) 213 214Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 212.633 kb on - strand, within Psyr_0198at 212.638 kb on + strand, within Psyr_0198at 212.638 kb on + strand, within Psyr_0198at 212.638 kb on + strand, within Psyr_0198at 212.639 kb on - strand, within Psyr_0198at 212.639 kb on - strand, within Psyr_0198at 212.830 kb on + strand, within Psyr_0198at 212.830 kb on + strand, within Psyr_0198at 212.830 kb on + strand, within Psyr_0198at 212.863 kb on + strand, within Psyr_0198at 212.863 kb on + strand, within Psyr_0198at 212.863 kb on + strand, within Psyr_0198at 212.863 kb on + strand, within Psyr_0198at 212.863 kb on + strand, within Psyr_0198at 212.863 kb on + strand, within Psyr_0198at 212.863 kb on + strand, within Psyr_0198at 212.863 kb on + strand, within Psyr_0198at 212.863 kb on + strand, within Psyr_0198at 212.863 kb on + strand, within Psyr_0198at 212.863 kb on + strand, within Psyr_0198at 212.863 kb on + strand, within Psyr_0198at 212.864 kb on - strand, within Psyr_0198at 212.864 kb on - strand, within Psyr_0198at 212.864 kb on - strand, within Psyr_0198at 212.864 kb on - strand, within Psyr_0198at 212.864 kb on - strand, within Psyr_0198at 212.864 kb on - strand, within Psyr_0198at 212.864 kb on - strand, within Psyr_0198at 212.864 kb on - strand, within Psyr_0198at 212.864 kb on - strand, within Psyr_0198at 212.864 kb on - strand, within Psyr_0198at 212.864 kb on - strand, within Psyr_0198at 212.864 kb on - strand, within Psyr_0198at 212.864 kb on - strand, within Psyr_0198at 213.010 kb on + strand, within Psyr_0198at 213.010 kb on + strand, within Psyr_0198at 213.059 kb on + strand, within Psyr_0198at 213.060 kb on - strand, within Psyr_0198at 213.060 kb on - strand, within Psyr_0198at 213.172 kb on + strandat 213.172 kb on + strandat 213.172 kb on + strandat 213.172 kb on + strandat 213.172 kb on + strandat 213.172 kb on + strandat 213.173 kb on - strandat 213.173 kb on - strandat 213.173 kb on - strandat 213.173 kb on - strandat 213.173 kb on - strandat 213.185 kb on + strandat 213.232 kb on + strandat 213.232 kb on + strandat 213.232 kb on + strandat 213.232 kb on + strandat 213.233 kb on - strandat 213.233 kb on - strandat 213.233 kb on - strandat 213.233 kb on - strandat 213.235 kb on + strandat 213.235 kb on + strandat 213.236 kb on - strandat 213.236 kb on - strandat 213.281 kb on - strandat 213.343 kb on + strandat 213.343 kb on + strandat 213.344 kb on - strandat 213.344 kb on - strandat 213.352 kb on + strandat 213.352 kb on + strandat 213.352 kb on + strandat 213.353 kb on - strandat 213.353 kb on - strandat 213.353 kb on - strandat 213.422 kb on + strandat 213.423 kb on - strandat 213.423 kb on - strandat 213.423 kb on - strandat 213.423 kb on - strandat 213.423 kb on - strandat 213.472 kb on - strandat 213.696 kb on - strand, within Psyr_0199at 213.722 kb on + strand, within Psyr_0199at 213.722 kb on + strand, within Psyr_0199at 213.847 kb on - strand, within Psyr_0199at 213.959 kb on + strandat 213.959 kb on + strandat 213.959 kb on + strandat 213.959 kb on + strandat 213.959 kb on + strandat 213.959 kb on + strandat 213.959 kb on + strandat 213.960 kb on - strandat 213.960 kb on - strandat 213.960 kb on - strandat 213.960 kb on - strandat 213.960 kb on - strandat 213.960 kb on - strandat 213.960 kb on - strandat 213.964 kb on + strandat 213.964 kb on + strandat 213.964 kb on + strandat 213.964 kb on + strandat 213.964 kb on + strandat 213.964 kb on + strandat 213.965 kb on - strandat 213.965 kb on - strandat 213.965 kb on - strandat 213.965 kb on - strandat 213.978 kb on - strandat 214.151 kb on + strand, within Psyr_0200at 214.151 kb on + strand, within Psyr_0200at 214.151 kb on + strand, within Psyr_0200at 214.152 kb on - strand, within Psyr_0200at 214.167 kb on - strand, within Psyr_0200at 214.187 kb on + strand, within Psyr_0200at 214.187 kb on + strand, within Psyr_0200at 214.187 kb on + strand, within Psyr_0200at 214.187 kb on + strand, within Psyr_0200at 214.188 kb on - strand, within Psyr_0200at 214.188 kb on - strand, within Psyr_0200at 214.188 kb on - strand, within Psyr_0200at 214.244 kb on + strand, within Psyr_0200at 214.418 kb on + strand, within Psyr_0200at 214.418 kb on + strand, within Psyr_0200at 214.418 kb on + strand, within Psyr_0200at 214.490 kb on + strand, within Psyr_0200at 214.490 kb on + strand, within Psyr_0200at 214.490 kb on + strand, within Psyr_0200at 214.490 kb on + strand, within Psyr_0200at 214.490 kb on + strand, within Psyr_0200at 214.490 kb on + strand, within Psyr_0200at 214.491 kb on - strand, within Psyr_0200at 214.491 kb on - strand, within Psyr_0200at 214.491 kb on - strand, within Psyr_0200at 214.491 kb on - strand, within Psyr_0200at 214.508 kb on + strand, within Psyr_0200at 214.603 kb on + strand, within Psyr_0200at 214.652 kb on + strand, within Psyr_0200at 214.655 kb on + strand, within Psyr_0200at 214.656 kb on - strand, within Psyr_0200

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Solanesol 10 mM
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212,633 - Psyr_0198 0.55 -1.0
212,638 + Psyr_0198 0.56 -0.7
212,638 + Psyr_0198 0.56 -1.9
212,638 + Psyr_0198 0.56 -0.9
212,639 - Psyr_0198 0.56 +0.6
212,639 - Psyr_0198 0.56 -0.2
212,830 + Psyr_0198 0.70 +1.0
212,830 + Psyr_0198 0.70 -0.3
212,830 + Psyr_0198 0.70 -0.7
212,863 + Psyr_0198 0.73 -0.8
212,863 + Psyr_0198 0.73 +0.5
212,863 + Psyr_0198 0.73 -2.8
212,863 + Psyr_0198 0.73 -0.2
212,863 + Psyr_0198 0.73 -0.2
212,863 + Psyr_0198 0.73 +2.9
212,863 + Psyr_0198 0.73 +0.0
212,863 + Psyr_0198 0.73 +0.5
212,863 + Psyr_0198 0.73 -1.1
212,863 + Psyr_0198 0.73 -0.6
212,863 + Psyr_0198 0.73 -0.4
212,863 + Psyr_0198 0.73 +1.8
212,864 - Psyr_0198 0.73 -0.2
212,864 - Psyr_0198 0.73 -0.9
212,864 - Psyr_0198 0.73 +2.9
212,864 - Psyr_0198 0.73 +0.4
212,864 - Psyr_0198 0.73 +0.6
212,864 - Psyr_0198 0.73 -0.3
212,864 - Psyr_0198 0.73 -0.2
212,864 - Psyr_0198 0.73 -2.4
212,864 - Psyr_0198 0.73 -1.1
212,864 - Psyr_0198 0.73 -1.0
212,864 - Psyr_0198 0.73 -0.2
212,864 - Psyr_0198 0.73 -0.2
212,864 - Psyr_0198 0.73 +0.4
213,010 + Psyr_0198 0.84 +0.7
213,010 + Psyr_0198 0.84 +0.3
213,059 + Psyr_0198 0.88 +0.2
213,060 - Psyr_0198 0.88 -1.7
213,060 - Psyr_0198 0.88 -0.6
213,172 + +1.1
213,172 + +1.6
213,172 + -0.8
213,172 + +2.4
213,172 + +0.8
213,172 + -0.2
213,173 - +0.6
213,173 - +3.2
213,173 - +0.9
213,173 - -1.4
213,173 - -0.0
213,185 + -1.3
213,232 + -0.2
213,232 + +0.3
213,232 + +1.1
213,232 + -0.0
213,233 - +0.8
213,233 - -0.7
213,233 - -1.1
213,233 - +0.1
213,235 + -0.1
213,235 + -0.2
213,236 - +0.1
213,236 - +0.4
213,281 - +1.5
213,343 + +0.2
213,343 + -0.6
213,344 - -0.1
213,344 - +1.0
213,352 + -0.0
213,352 + +0.3
213,352 + +0.2
213,353 - +0.3
213,353 - -0.4
213,353 - -0.3
213,422 + +0.4
213,423 - -0.3
213,423 - -2.2
213,423 - -0.6
213,423 - +0.6
213,423 - +1.1
213,472 - -1.7
213,696 - Psyr_0199 0.46 -0.6
213,722 + Psyr_0199 0.52 +0.1
213,722 + Psyr_0199 0.52 -0.7
213,847 - Psyr_0199 0.83 -1.5
213,959 + -0.8
213,959 + +0.7
213,959 + -0.7
213,959 + +0.6
213,959 + -0.8
213,959 + +1.0
213,959 + +1.4
213,960 - -2.2
213,960 - -1.7
213,960 - -1.2
213,960 - +0.5
213,960 - +2.4
213,960 - +0.8
213,960 - -0.1
213,964 + +0.2
213,964 + -0.5
213,964 + -0.2
213,964 + -1.2
213,964 + +0.1
213,964 + -2.5
213,965 - -1.2
213,965 - +0.4
213,965 - -1.2
213,965 - -0.3
213,978 - -1.6
214,151 + Psyr_0200 0.13 -0.2
214,151 + Psyr_0200 0.13 +0.2
214,151 + Psyr_0200 0.13 -0.8
214,152 - Psyr_0200 0.13 -0.8
214,167 - Psyr_0200 0.14 +0.7
214,187 + Psyr_0200 0.15 +2.7
214,187 + Psyr_0200 0.15 +1.0
214,187 + Psyr_0200 0.15 +3.8
214,187 + Psyr_0200 0.15 -0.1
214,188 - Psyr_0200 0.15 +0.9
214,188 - Psyr_0200 0.15 +1.8
214,188 - Psyr_0200 0.15 -0.2
214,244 + Psyr_0200 0.19 -2.2
214,418 + Psyr_0200 0.32 +1.9
214,418 + Psyr_0200 0.32 +0.5
214,418 + Psyr_0200 0.32 +0.5
214,490 + Psyr_0200 0.37 -0.0
214,490 + Psyr_0200 0.37 -0.1
214,490 + Psyr_0200 0.37 +0.3
214,490 + Psyr_0200 0.37 +0.4
214,490 + Psyr_0200 0.37 +0.1
214,490 + Psyr_0200 0.37 +0.1
214,491 - Psyr_0200 0.37 +1.1
214,491 - Psyr_0200 0.37 +0.0
214,491 - Psyr_0200 0.37 -1.3
214,491 - Psyr_0200 0.37 -0.7
214,508 + Psyr_0200 0.38 +0.1
214,603 + Psyr_0200 0.45 +0.1
214,652 + Psyr_0200 0.48 +2.0
214,655 + Psyr_0200 0.49 +0.5
214,656 - Psyr_0200 0.49 +0.4

Or see this region's nucleotide sequence