Experiment: KB with Solanesol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0197 and Psyr_0198 are separated by 69 nucleotides Psyr_0198 and Psyr_0199 are separated by 296 nucleotides Psyr_0199 and Psyr_0200 are separated by 62 nucleotides
Psyr_0197: Psyr_0197 - Mg chelatase-related protein, at 210,345 to 211,838
_0197
Psyr_0198: Psyr_0198 - Citrate transporter, at 211,908 to 213,215
_0198
Psyr_0199: Psyr_0199 - Glutathione-dependent formaldehyde-activating, GFA, at 213,512 to 213,913
_0199
Psyr_0200: Psyr_0200 - conserved hypothetical protein, at 213,976 to 215,373
_0200
Position (kb) 211
212
213
214 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 210.917 kb on + strand, within Psyr_0197 at 210.980 kb on + strand, within Psyr_0197 at 211.237 kb on + strand, within Psyr_0197 at 211.237 kb on + strand, within Psyr_0197 at 211.285 kb on + strand, within Psyr_0197 at 211.285 kb on + strand, within Psyr_0197 at 211.285 kb on + strand, within Psyr_0197 at 211.285 kb on + strand, within Psyr_0197 at 211.285 kb on + strand, within Psyr_0197 at 211.285 kb on + strand, within Psyr_0197 at 211.285 kb on + strand, within Psyr_0197 at 211.286 kb on - strand, within Psyr_0197 at 211.311 kb on - strand, within Psyr_0197 at 211.395 kb on + strand, within Psyr_0197 at 211.653 kb on + strand, within Psyr_0197 at 211.899 kb on + strand at 211.899 kb on + strand at 211.900 kb on - strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.920 kb on - strand at 211.920 kb on - strand at 211.920 kb on - strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.922 kb on - strand at 211.922 kb on - strand at 211.922 kb on - strand at 211.922 kb on - strand at 211.922 kb on - strand at 211.922 kb on - strand at 211.922 kb on - strand at 211.988 kb on + strand at 211.988 kb on + strand at 211.989 kb on - strand at 212.044 kb on + strand, within Psyr_0198 at 212.044 kb on + strand, within Psyr_0198 at 212.045 kb on - strand, within Psyr_0198 at 212.045 kb on - strand, within Psyr_0198 at 212.167 kb on + strand, within Psyr_0198 at 212.168 kb on - strand, within Psyr_0198 at 212.170 kb on + strand, within Psyr_0198 at 212.170 kb on + strand, within Psyr_0198 at 212.170 kb on + strand, within Psyr_0198 at 212.170 kb on + strand, within Psyr_0198 at 212.170 kb on + strand, within Psyr_0198 at 212.171 kb on - strand, within Psyr_0198 at 212.171 kb on - strand, within Psyr_0198 at 212.171 kb on - strand, within Psyr_0198 at 212.171 kb on - strand, within Psyr_0198 at 212.633 kb on - strand, within Psyr_0198 at 212.638 kb on + strand, within Psyr_0198 at 212.638 kb on + strand, within Psyr_0198 at 212.638 kb on + strand, within Psyr_0198 at 212.639 kb on - strand, within Psyr_0198 at 212.639 kb on - strand, within Psyr_0198 at 212.830 kb on + strand, within Psyr_0198 at 212.830 kb on + strand, within Psyr_0198 at 212.830 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 213.010 kb on + strand, within Psyr_0198 at 213.010 kb on + strand, within Psyr_0198 at 213.059 kb on + strand, within Psyr_0198 at 213.060 kb on - strand, within Psyr_0198 at 213.060 kb on - strand, within Psyr_0198 at 213.172 kb on + strand at 213.172 kb on + strand at 213.172 kb on + strand at 213.172 kb on + strand at 213.172 kb on + strand at 213.172 kb on + strand at 213.173 kb on - strand at 213.173 kb on - strand at 213.173 kb on - strand at 213.173 kb on - strand at 213.173 kb on - strand at 213.185 kb on + strand at 213.232 kb on + strand at 213.232 kb on + strand at 213.232 kb on + strand at 213.232 kb on + strand at 213.233 kb on - strand at 213.233 kb on - strand at 213.233 kb on - strand at 213.233 kb on - strand at 213.235 kb on + strand at 213.235 kb on + strand at 213.236 kb on - strand at 213.236 kb on - strand at 213.281 kb on - strand at 213.343 kb on + strand at 213.343 kb on + strand at 213.344 kb on - strand at 213.344 kb on - strand at 213.352 kb on + strand at 213.352 kb on + strand at 213.352 kb on + strand at 213.353 kb on - strand at 213.353 kb on - strand at 213.353 kb on - strand at 213.422 kb on + strand at 213.423 kb on - strand at 213.423 kb on - strand at 213.423 kb on - strand at 213.423 kb on - strand at 213.423 kb on - strand at 213.472 kb on - strand at 213.696 kb on - strand, within Psyr_0199 at 213.722 kb on + strand, within Psyr_0199 at 213.722 kb on + strand, within Psyr_0199 at 213.847 kb on - strand, within Psyr_0199 at 213.959 kb on + strand at 213.959 kb on + strand at 213.959 kb on + strand at 213.959 kb on + strand at 213.959 kb on + strand at 213.959 kb on + strand at 213.959 kb on + strand at 213.960 kb on - strand at 213.960 kb on - strand at 213.960 kb on - strand at 213.960 kb on - strand at 213.960 kb on - strand at 213.960 kb on - strand at 213.960 kb on - strand at 213.964 kb on + strand at 213.964 kb on + strand at 213.964 kb on + strand at 213.964 kb on + strand at 213.964 kb on + strand at 213.964 kb on + strand at 213.965 kb on - strand at 213.965 kb on - strand at 213.965 kb on - strand at 213.965 kb on - strand at 213.978 kb on - strand at 214.151 kb on + strand, within Psyr_0200 at 214.151 kb on + strand, within Psyr_0200 at 214.151 kb on + strand, within Psyr_0200 at 214.152 kb on - strand, within Psyr_0200 at 214.167 kb on - strand, within Psyr_0200 at 214.187 kb on + strand, within Psyr_0200 at 214.187 kb on + strand, within Psyr_0200 at 214.187 kb on + strand, within Psyr_0200 at 214.187 kb on + strand, within Psyr_0200 at 214.188 kb on - strand, within Psyr_0200 at 214.188 kb on - strand, within Psyr_0200 at 214.188 kb on - strand, within Psyr_0200
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Solanesol 10 mM remove 210,917 + Psyr_0197 0.38 -0.3 210,980 + Psyr_0197 0.43 +0.9 211,237 + Psyr_0197 0.60 -0.0 211,237 + Psyr_0197 0.60 +0.1 211,285 + Psyr_0197 0.63 -0.6 211,285 + Psyr_0197 0.63 +1.4 211,285 + Psyr_0197 0.63 +0.6 211,285 + Psyr_0197 0.63 -0.6 211,285 + Psyr_0197 0.63 -0.9 211,285 + Psyr_0197 0.63 +0.2 211,285 + Psyr_0197 0.63 -2.1 211,286 - Psyr_0197 0.63 +0.6 211,311 - Psyr_0197 0.65 +1.0 211,395 + Psyr_0197 0.70 -0.3 211,653 + Psyr_0197 0.88 +0.5 211,899 + -0.2 211,899 + -0.3 211,900 - -0.4 211,909 + -0.4 211,909 + -0.1 211,909 + -0.5 211,909 + +0.7 211,909 + +0.5 211,909 + -0.2 211,909 + +0.7 211,909 + -0.6 211,909 + +0.8 211,909 + +0.1 211,909 + +0.7 211,909 + -0.2 211,909 + +0.5 211,910 - +0.1 211,910 - +0.6 211,910 - -1.2 211,910 - +0.4 211,910 - -0.1 211,910 - +0.9 211,910 - -0.4 211,910 - -0.2 211,910 - +3.4 211,910 - +0.4 211,910 - -0.4 211,910 - +1.4 211,910 - -1.3 211,910 - -1.0 211,910 - -1.7 211,910 - +0.2 211,910 - -0.8 211,910 - -0.1 211,910 - +0.4 211,910 - -0.6 211,910 - +0.2 211,910 - +0.3 211,920 - +0.0 211,920 - -1.2 211,920 - -0.2 211,921 + +1.0 211,921 + -0.4 211,921 + +0.4 211,921 + -1.1 211,921 + -0.7 211,921 + +1.5 211,921 + +0.3 211,921 + -0.0 211,921 + +1.7 211,921 + -0.5 211,921 + -0.9 211,921 + -1.0 211,921 + -0.7 211,922 - +0.2 211,922 - -0.3 211,922 - -0.9 211,922 - +0.6 211,922 - +1.4 211,922 - -1.4 211,922 - +0.9 211,988 + +0.2 211,988 + -0.5 211,989 - +0.7 212,044 + Psyr_0198 0.10 +0.2 212,044 + Psyr_0198 0.10 -0.1 212,045 - Psyr_0198 0.10 +2.4 212,045 - Psyr_0198 0.10 -0.5 212,167 + Psyr_0198 0.20 -1.1 212,168 - Psyr_0198 0.20 -0.1 212,170 + Psyr_0198 0.20 -1.3 212,170 + Psyr_0198 0.20 +0.5 212,170 + Psyr_0198 0.20 +0.6 212,170 + Psyr_0198 0.20 -0.2 212,170 + Psyr_0198 0.20 +0.4 212,171 - Psyr_0198 0.20 -1.0 212,171 - Psyr_0198 0.20 -0.6 212,171 - Psyr_0198 0.20 -1.3 212,171 - Psyr_0198 0.20 -0.7 212,633 - Psyr_0198 0.55 -1.0 212,638 + Psyr_0198 0.56 -0.7 212,638 + Psyr_0198 0.56 -1.9 212,638 + Psyr_0198 0.56 -0.9 212,639 - Psyr_0198 0.56 +0.6 212,639 - Psyr_0198 0.56 -0.2 212,830 + Psyr_0198 0.70 +1.0 212,830 + Psyr_0198 0.70 -0.3 212,830 + Psyr_0198 0.70 -0.7 212,863 + Psyr_0198 0.73 -0.8 212,863 + Psyr_0198 0.73 +0.5 212,863 + Psyr_0198 0.73 -2.8 212,863 + Psyr_0198 0.73 -0.2 212,863 + Psyr_0198 0.73 -0.2 212,863 + Psyr_0198 0.73 +2.9 212,863 + Psyr_0198 0.73 +0.0 212,863 + Psyr_0198 0.73 +0.5 212,863 + Psyr_0198 0.73 -1.1 212,863 + Psyr_0198 0.73 -0.6 212,863 + Psyr_0198 0.73 -0.4 212,863 + Psyr_0198 0.73 +1.8 212,864 - Psyr_0198 0.73 -0.2 212,864 - Psyr_0198 0.73 -0.9 212,864 - Psyr_0198 0.73 +2.9 212,864 - Psyr_0198 0.73 +0.4 212,864 - Psyr_0198 0.73 +0.6 212,864 - Psyr_0198 0.73 -0.3 212,864 - Psyr_0198 0.73 -0.2 212,864 - Psyr_0198 0.73 -2.4 212,864 - Psyr_0198 0.73 -1.1 212,864 - Psyr_0198 0.73 -1.0 212,864 - Psyr_0198 0.73 -0.2 212,864 - Psyr_0198 0.73 -0.2 212,864 - Psyr_0198 0.73 +0.4 213,010 + Psyr_0198 0.84 +0.7 213,010 + Psyr_0198 0.84 +0.3 213,059 + Psyr_0198 0.88 +0.2 213,060 - Psyr_0198 0.88 -1.7 213,060 - Psyr_0198 0.88 -0.6 213,172 + +1.1 213,172 + +1.6 213,172 + -0.8 213,172 + +2.4 213,172 + +0.8 213,172 + -0.2 213,173 - +0.6 213,173 - +3.2 213,173 - +0.9 213,173 - -1.4 213,173 - -0.0 213,185 + -1.3 213,232 + -0.2 213,232 + +0.3 213,232 + +1.1 213,232 + -0.0 213,233 - +0.8 213,233 - -0.7 213,233 - -1.1 213,233 - +0.1 213,235 + -0.1 213,235 + -0.2 213,236 - +0.1 213,236 - +0.4 213,281 - +1.5 213,343 + +0.2 213,343 + -0.6 213,344 - -0.1 213,344 - +1.0 213,352 + -0.0 213,352 + +0.3 213,352 + +0.2 213,353 - +0.3 213,353 - -0.4 213,353 - -0.3 213,422 + +0.4 213,423 - -0.3 213,423 - -2.2 213,423 - -0.6 213,423 - +0.6 213,423 - +1.1 213,472 - -1.7 213,696 - Psyr_0199 0.46 -0.6 213,722 + Psyr_0199 0.52 +0.1 213,722 + Psyr_0199 0.52 -0.7 213,847 - Psyr_0199 0.83 -1.5 213,959 + -0.8 213,959 + +0.7 213,959 + -0.7 213,959 + +0.6 213,959 + -0.8 213,959 + +1.0 213,959 + +1.4 213,960 - -2.2 213,960 - -1.7 213,960 - -1.2 213,960 - +0.5 213,960 - +2.4 213,960 - +0.8 213,960 - -0.1 213,964 + +0.2 213,964 + -0.5 213,964 + -0.2 213,964 + -1.2 213,964 + +0.1 213,964 + -2.5 213,965 - -1.2 213,965 - +0.4 213,965 - -1.2 213,965 - -0.3 213,978 - -1.6 214,151 + Psyr_0200 0.13 -0.2 214,151 + Psyr_0200 0.13 +0.2 214,151 + Psyr_0200 0.13 -0.8 214,152 - Psyr_0200 0.13 -0.8 214,167 - Psyr_0200 0.14 +0.7 214,187 + Psyr_0200 0.15 +2.7 214,187 + Psyr_0200 0.15 +1.0 214,187 + Psyr_0200 0.15 +3.8 214,187 + Psyr_0200 0.15 -0.1 214,188 - Psyr_0200 0.15 +0.9 214,188 - Psyr_0200 0.15 +1.8 214,188 - Psyr_0200 0.15 -0.2
Or see this region's nucleotide sequence