Experiment: DinoMM minimal media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_947 and HP15_948 are separated by 46 nucleotides HP15_948 and HP15_949 are separated by 120 nucleotides HP15_949 and HP15_950 overlap by 4 nucleotides
HP15_947: HP15_947 - diguanylate cyclase (GGDEF domain) with PAS/PAC sensor, at 963,578 to 964,903
_947
HP15_948: HP15_948 - conserved hypothetical protein, secreted, at 964,950 to 965,378
_948
HP15_949: HP15_949 - conserved hypothetical protein, at 965,499 to 966,227
_949
HP15_950: HP15_950 - RNA polymerase, sigma-24 subunit, ECF subfamily, at 966,224 to 966,832
_950
Position (kb) 964
965
966 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 964.075 kb on + strand, within HP15_947 at 964.083 kb on - strand, within HP15_947 at 964.088 kb on - strand, within HP15_947 at 964.239 kb on - strand, within HP15_947 at 964.242 kb on + strand, within HP15_947 at 964.407 kb on - strand, within HP15_947 at 964.454 kb on + strand, within HP15_947 at 964.474 kb on + strand, within HP15_947 at 964.486 kb on + strand, within HP15_947 at 964.537 kb on + strand, within HP15_947 at 964.537 kb on + strand, within HP15_947 at 964.543 kb on - strand, within HP15_947 at 964.545 kb on - strand, within HP15_947 at 964.604 kb on - strand, within HP15_947 at 964.829 kb on - strand at 964.906 kb on - strand at 964.925 kb on - strand at 965.099 kb on - strand, within HP15_948 at 965.130 kb on + strand, within HP15_948 at 965.130 kb on + strand, within HP15_948 at 965.130 kb on + strand, within HP15_948 at 965.138 kb on - strand, within HP15_948 at 965.282 kb on + strand, within HP15_948 at 965.282 kb on - strand, within HP15_948 at 965.314 kb on - strand, within HP15_948 at 965.409 kb on - strand at 965.518 kb on + strand at 965.526 kb on - strand at 965.545 kb on + strand at 965.553 kb on - strand at 965.589 kb on + strand, within HP15_949 at 965.605 kb on + strand, within HP15_949 at 965.613 kb on - strand, within HP15_949 at 965.615 kb on + strand, within HP15_949 at 965.623 kb on - strand, within HP15_949 at 965.623 kb on - strand, within HP15_949 at 965.857 kb on + strand, within HP15_949 at 965.865 kb on - strand, within HP15_949 at 965.966 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.017 kb on - strand, within HP15_949 at 966.051 kb on - strand, within HP15_949 at 966.056 kb on - strand, within HP15_949 at 966.239 kb on + strand at 966.250 kb on + strand at 966.250 kb on + strand at 966.250 kb on + strand at 966.250 kb on + strand at 966.250 kb on + strand at 966.258 kb on - strand at 966.258 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media remove 964,075 + HP15_947 0.37 +1.0 964,083 - HP15_947 0.38 +0.4 964,088 - HP15_947 0.38 -0.9 964,239 - HP15_947 0.50 -0.1 964,242 + HP15_947 0.50 +1.0 964,407 - HP15_947 0.63 -0.5 964,454 + HP15_947 0.66 -2.1 964,474 + HP15_947 0.68 -0.9 964,486 + HP15_947 0.68 -0.3 964,537 + HP15_947 0.72 +0.2 964,537 + HP15_947 0.72 +2.6 964,543 - HP15_947 0.73 +1.0 964,545 - HP15_947 0.73 +1.0 964,604 - HP15_947 0.77 -2.0 964,829 - +0.6 964,906 - -0.6 964,925 - -0.5 965,099 - HP15_948 0.35 +0.8 965,130 + HP15_948 0.42 +0.6 965,130 + HP15_948 0.42 -0.7 965,130 + HP15_948 0.42 +0.4 965,138 - HP15_948 0.44 -0.6 965,282 + HP15_948 0.77 -0.3 965,282 - HP15_948 0.77 +0.0 965,314 - HP15_948 0.85 +0.8 965,409 - -0.2 965,518 + -0.1 965,526 - -0.3 965,545 + +0.6 965,553 - +0.9 965,589 + HP15_949 0.12 +0.7 965,605 + HP15_949 0.15 +1.0 965,613 - HP15_949 0.16 +0.4 965,615 + HP15_949 0.16 -0.2 965,623 - HP15_949 0.17 +2.0 965,623 - HP15_949 0.17 +0.6 965,857 + HP15_949 0.49 +0.7 965,865 - HP15_949 0.50 +1.3 965,966 + HP15_949 0.64 +1.0 966,009 + HP15_949 0.70 +1.3 966,009 + HP15_949 0.70 -2.1 966,009 + HP15_949 0.70 -0.3 966,009 + HP15_949 0.70 +1.2 966,009 + HP15_949 0.70 -0.8 966,009 + HP15_949 0.70 +0.8 966,009 + HP15_949 0.70 -1.2 966,009 + HP15_949 0.70 -0.3 966,009 + HP15_949 0.70 -0.8 966,009 + HP15_949 0.70 +0.0 966,017 - HP15_949 0.71 -1.2 966,051 - HP15_949 0.76 -0.9 966,056 - HP15_949 0.76 -0.4 966,239 + +0.0 966,250 + -0.8 966,250 + -1.8 966,250 + -0.4 966,250 + -1.1 966,250 + -0.6 966,258 - +2.8 966,258 - -0.0
Or see this region's nucleotide sequence