Experiment: DinoMM minimal media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_945 and HP15_946 are separated by 89 nucleotides HP15_946 and HP15_947 overlap by 4 nucleotides
HP15_945: HP15_945 - protein containing immunoglobulin I-set domain, at 961,798 to 963,255
_945
HP15_946: HP15_946 - conserved hypothetical protein, at 963,345 to 963,581
_946
HP15_947: HP15_947 - diguanylate cyclase (GGDEF domain) with PAS/PAC sensor, at 963,578 to 964,903
_947
Position (kb) 963
964 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 962.386 kb on - strand, within HP15_945 at 962.396 kb on - strand, within HP15_945 at 962.526 kb on + strand, within HP15_945 at 962.544 kb on + strand, within HP15_945 at 962.547 kb on - strand, within HP15_945 at 962.549 kb on + strand, within HP15_945 at 962.559 kb on - strand, within HP15_945 at 962.584 kb on + strand, within HP15_945 at 962.592 kb on - strand, within HP15_945 at 962.610 kb on - strand, within HP15_945 at 962.612 kb on + strand, within HP15_945 at 962.620 kb on + strand, within HP15_945 at 962.620 kb on - strand, within HP15_945 at 962.620 kb on - strand, within HP15_945 at 962.620 kb on - strand, within HP15_945 at 962.683 kb on + strand, within HP15_945 at 962.691 kb on - strand, within HP15_945 at 962.699 kb on - strand, within HP15_945 at 962.754 kb on - strand, within HP15_945 at 962.885 kb on + strand, within HP15_945 at 962.930 kb on + strand, within HP15_945 at 962.975 kb on - strand, within HP15_945 at 962.985 kb on - strand, within HP15_945 at 962.996 kb on + strand, within HP15_945 at 962.997 kb on - strand, within HP15_945 at 963.012 kb on - strand, within HP15_945 at 963.185 kb on + strand at 963.313 kb on - strand at 963.360 kb on - strand at 963.411 kb on - strand, within HP15_946 at 963.411 kb on - strand, within HP15_946 at 963.474 kb on - strand, within HP15_946 at 963.603 kb on + strand at 963.651 kb on + strand at 963.659 kb on - strand at 963.659 kb on - strand at 963.659 kb on - strand at 963.795 kb on - strand, within HP15_947 at 963.795 kb on - strand, within HP15_947 at 963.837 kb on + strand, within HP15_947 at 963.837 kb on + strand, within HP15_947 at 963.845 kb on - strand, within HP15_947 at 963.859 kb on - strand, within HP15_947 at 963.943 kb on + strand, within HP15_947 at 964.075 kb on + strand, within HP15_947 at 964.083 kb on - strand, within HP15_947 at 964.088 kb on - strand, within HP15_947 at 964.239 kb on - strand, within HP15_947 at 964.242 kb on + strand, within HP15_947 at 964.407 kb on - strand, within HP15_947 at 964.454 kb on + strand, within HP15_947 at 964.474 kb on + strand, within HP15_947 at 964.486 kb on + strand, within HP15_947 at 964.537 kb on + strand, within HP15_947 at 964.537 kb on + strand, within HP15_947 at 964.543 kb on - strand, within HP15_947 at 964.545 kb on - strand, within HP15_947
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media remove 962,386 - HP15_945 0.40 +0.2 962,396 - HP15_945 0.41 +0.2 962,526 + HP15_945 0.50 -0.3 962,544 + HP15_945 0.51 -1.2 962,547 - HP15_945 0.51 -1.2 962,549 + HP15_945 0.52 +1.2 962,559 - HP15_945 0.52 -1.6 962,584 + HP15_945 0.54 -2.1 962,592 - HP15_945 0.54 -1.0 962,610 - HP15_945 0.56 -0.7 962,612 + HP15_945 0.56 -0.6 962,620 + HP15_945 0.56 +3.0 962,620 - HP15_945 0.56 -0.0 962,620 - HP15_945 0.56 -1.1 962,620 - HP15_945 0.56 +0.1 962,683 + HP15_945 0.61 -3.1 962,691 - HP15_945 0.61 +1.1 962,699 - HP15_945 0.62 +0.9 962,754 - HP15_945 0.66 -0.6 962,885 + HP15_945 0.75 +0.7 962,930 + HP15_945 0.78 +1.2 962,975 - HP15_945 0.81 +0.9 962,985 - HP15_945 0.81 -0.5 962,996 + HP15_945 0.82 -0.6 962,997 - HP15_945 0.82 -0.3 963,012 - HP15_945 0.83 +0.9 963,185 + -0.2 963,313 - +0.1 963,360 - -0.3 963,411 - HP15_946 0.28 -0.7 963,411 - HP15_946 0.28 -2.4 963,474 - HP15_946 0.54 -1.0 963,603 + -0.1 963,651 + -0.2 963,659 - -2.3 963,659 - +1.0 963,659 - -0.6 963,795 - HP15_947 0.16 +0.6 963,795 - HP15_947 0.16 +0.9 963,837 + HP15_947 0.20 -1.0 963,837 + HP15_947 0.20 -0.1 963,845 - HP15_947 0.20 -1.7 963,859 - HP15_947 0.21 -0.9 963,943 + HP15_947 0.28 -0.7 964,075 + HP15_947 0.37 +1.0 964,083 - HP15_947 0.38 +0.4 964,088 - HP15_947 0.38 -0.9 964,239 - HP15_947 0.50 -0.1 964,242 + HP15_947 0.50 +1.0 964,407 - HP15_947 0.63 -0.5 964,454 + HP15_947 0.66 -2.1 964,474 + HP15_947 0.68 -0.9 964,486 + HP15_947 0.68 -0.3 964,537 + HP15_947 0.72 +0.2 964,537 + HP15_947 0.72 +2.6 964,543 - HP15_947 0.73 +1.0 964,545 - HP15_947 0.73 +1.0
Or see this region's nucleotide sequence