Strain Fitness in Marinobacter adhaerens HP15 around HP15_362

Experiment: DinoMM minimal media

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_360 and HP15_361 overlap by 4 nucleotidesHP15_361 and HP15_362 are separated by 20 nucleotidesHP15_362 and HP15_363 are separated by 102 nucleotides HP15_360: HP15_360 - conserved hypothetical protein, secreted, at 361,142 to 362,221 _360 HP15_361: HP15_361 - conserved hypothetical protein, secreted, at 362,218 to 362,766 _361 HP15_362: HP15_362 - conserved hypothetical protein, secreted, at 362,787 to 365,189 _362 HP15_363: HP15_363 - biotin-protein ligase, at 365,292 to 366,257 _363 Position (kb) 362 363 364 365 366Strain fitness (log2 ratio) -2 -1 0 1 2at 362.023 kb on + strand, within HP15_360at 362.093 kb on + strand, within HP15_360at 362.202 kb on + strandat 362.202 kb on - strandat 362.215 kb on - strandat 362.237 kb on + strandat 362.332 kb on - strand, within HP15_361at 362.332 kb on - strand, within HP15_361at 362.334 kb on + strand, within HP15_361at 362.334 kb on + strand, within HP15_361at 362.342 kb on - strand, within HP15_361at 362.342 kb on - strand, within HP15_361at 362.381 kb on + strand, within HP15_361at 362.394 kb on - strand, within HP15_361at 362.516 kb on + strand, within HP15_361at 362.579 kb on - strand, within HP15_361at 362.591 kb on + strand, within HP15_361at 362.601 kb on + strand, within HP15_361at 362.601 kb on + strand, within HP15_361at 362.601 kb on + strand, within HP15_361at 362.609 kb on - strand, within HP15_361at 362.609 kb on - strand, within HP15_361at 362.624 kb on - strand, within HP15_361at 362.646 kb on + strand, within HP15_361at 362.664 kb on - strand, within HP15_361at 362.675 kb on + strand, within HP15_361at 362.695 kb on - strand, within HP15_361at 362.776 kb on + strandat 362.776 kb on + strandat 362.776 kb on + strandat 362.784 kb on - strandat 362.784 kb on - strandat 362.802 kb on - strandat 362.832 kb on + strandat 362.854 kb on - strandat 362.855 kb on - strandat 362.889 kb on - strandat 362.890 kb on + strandat 362.941 kb on + strandat 362.966 kb on + strandat 363.030 kb on - strand, within HP15_362at 363.064 kb on + strand, within HP15_362at 363.160 kb on + strand, within HP15_362at 363.346 kb on + strand, within HP15_362at 363.346 kb on + strand, within HP15_362at 363.352 kb on + strand, within HP15_362at 363.352 kb on + strand, within HP15_362at 363.707 kb on + strand, within HP15_362at 363.712 kb on + strand, within HP15_362at 363.717 kb on + strand, within HP15_362at 363.723 kb on + strand, within HP15_362at 363.723 kb on + strand, within HP15_362at 363.774 kb on - strand, within HP15_362at 363.834 kb on - strand, within HP15_362at 363.872 kb on + strand, within HP15_362at 363.887 kb on + strand, within HP15_362at 363.977 kb on + strand, within HP15_362at 363.987 kb on + strand, within HP15_362at 363.990 kb on + strand, within HP15_362at 363.995 kb on + strand, within HP15_362at 363.995 kb on + strand, within HP15_362at 363.997 kb on + strand, within HP15_362at 364.081 kb on + strand, within HP15_362at 364.091 kb on + strand, within HP15_362at 364.099 kb on - strand, within HP15_362at 364.143 kb on + strand, within HP15_362at 364.151 kb on + strand, within HP15_362at 364.151 kb on + strand, within HP15_362at 364.164 kb on - strand, within HP15_362at 364.164 kb on - strand, within HP15_362at 364.198 kb on + strand, within HP15_362at 364.396 kb on + strand, within HP15_362at 364.404 kb on - strand, within HP15_362at 364.408 kb on + strand, within HP15_362at 364.417 kb on + strand, within HP15_362at 364.417 kb on + strand, within HP15_362at 364.425 kb on - strand, within HP15_362at 364.434 kb on + strand, within HP15_362at 364.435 kb on - strand, within HP15_362at 364.440 kb on + strand, within HP15_362at 364.548 kb on - strand, within HP15_362at 364.616 kb on + strand, within HP15_362at 364.651 kb on + strand, within HP15_362at 364.794 kb on + strand, within HP15_362at 364.854 kb on - strand, within HP15_362at 365.035 kb on + strandat 365.339 kb on + strandat 365.339 kb on + strandat 365.477 kb on + strand, within HP15_363at 365.477 kb on + strand, within HP15_363at 365.485 kb on - strand, within HP15_363

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media
remove
362,023 + HP15_360 0.82 -0.2
362,093 + HP15_360 0.88 +1.1
362,202 + -0.7
362,202 - -0.7
362,215 - +1.4
362,237 + -0.2
362,332 - HP15_361 0.21 +0.5
362,332 - HP15_361 0.21 -0.2
362,334 + HP15_361 0.21 +0.3
362,334 + HP15_361 0.21 +0.6
362,342 - HP15_361 0.23 -1.8
362,342 - HP15_361 0.23 -0.2
362,381 + HP15_361 0.30 +0.1
362,394 - HP15_361 0.32 +1.2
362,516 + HP15_361 0.54 +0.6
362,579 - HP15_361 0.66 -0.0
362,591 + HP15_361 0.68 +1.6
362,601 + HP15_361 0.70 +1.7
362,601 + HP15_361 0.70 +1.7
362,601 + HP15_361 0.70 +1.8
362,609 - HP15_361 0.71 +0.5
362,609 - HP15_361 0.71 +0.1
362,624 - HP15_361 0.74 -1.1
362,646 + HP15_361 0.78 -0.0
362,664 - HP15_361 0.81 -1.2
362,675 + HP15_361 0.83 +1.1
362,695 - HP15_361 0.87 -0.1
362,776 + -0.5
362,776 + -0.6
362,776 + +0.5
362,784 - +2.0
362,784 - +0.9
362,802 - +1.3
362,832 + -0.7
362,854 - +0.0
362,855 - -1.3
362,889 - +1.0
362,890 + +0.8
362,941 + -0.2
362,966 + +2.1
363,030 - HP15_362 0.10 +1.5
363,064 + HP15_362 0.12 +1.0
363,160 + HP15_362 0.16 +1.6
363,346 + HP15_362 0.23 -0.6
363,346 + HP15_362 0.23 +1.3
363,352 + HP15_362 0.24 +0.0
363,352 + HP15_362 0.24 -0.4
363,707 + HP15_362 0.38 +0.7
363,712 + HP15_362 0.38 +1.0
363,717 + HP15_362 0.39 +0.4
363,723 + HP15_362 0.39 +0.0
363,723 + HP15_362 0.39 -0.1
363,774 - HP15_362 0.41 -0.7
363,834 - HP15_362 0.44 +0.2
363,872 + HP15_362 0.45 -0.5
363,887 + HP15_362 0.46 -0.2
363,977 + HP15_362 0.50 +0.3
363,987 + HP15_362 0.50 +1.3
363,990 + HP15_362 0.50 +0.8
363,995 + HP15_362 0.50 -0.4
363,995 + HP15_362 0.50 -1.0
363,997 + HP15_362 0.50 +1.5
364,081 + HP15_362 0.54 +0.1
364,091 + HP15_362 0.54 +1.0
364,099 - HP15_362 0.55 -0.1
364,143 + HP15_362 0.56 +0.8
364,151 + HP15_362 0.57 +0.5
364,151 + HP15_362 0.57 -1.1
364,164 - HP15_362 0.57 +0.9
364,164 - HP15_362 0.57 +1.3
364,198 + HP15_362 0.59 +0.4
364,396 + HP15_362 0.67 +0.9
364,404 - HP15_362 0.67 +0.7
364,408 + HP15_362 0.67 +2.5
364,417 + HP15_362 0.68 -0.2
364,417 + HP15_362 0.68 +0.1
364,425 - HP15_362 0.68 -0.8
364,434 + HP15_362 0.69 +1.4
364,435 - HP15_362 0.69 +0.3
364,440 + HP15_362 0.69 +0.8
364,548 - HP15_362 0.73 -0.8
364,616 + HP15_362 0.76 -0.4
364,651 + HP15_362 0.78 +1.2
364,794 + HP15_362 0.84 -0.4
364,854 - HP15_362 0.86 -1.6
365,035 + -0.2
365,339 + +0.4
365,339 + +1.1
365,477 + HP15_363 0.19 +0.5
365,477 + HP15_363 0.19 -0.2
365,485 - HP15_363 0.20 -0.1

Or see this region's nucleotide sequence