Experiment: DinoMM minimal media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2647 and HP15_2648 are separated by 32 nucleotides HP15_2648 and HP15_2649 overlap by 14 nucleotides HP15_2649 and HP15_2650 overlap by 4 nucleotides HP15_2650 and HP15_2651 are separated by 105 nucleotides
HP15_2647: HP15_2647 - peptidoglycan-binding domain 1 protein, at 2,797,459 to 2,799,111
_2647
HP15_2648: HP15_2648 - conserved hypothetical protein, at 2,799,144 to 2,799,596
_2648
HP15_2649: HP15_2649 - alpha/beta hydrolase fold protein, at 2,799,583 to 2,800,518
_2649
HP15_2650: HP15_2650 - selenoprotein W-related protein, at 2,800,515 to 2,800,805
_2650
HP15_2651: HP15_2651 - NADH:flavin oxidoreductase/NADH oxidase, at 2,800,911 to 2,802,011
_2651
Position (kb)
2799
2800
2801 Strain fitness (log2 ratio)
-2
-1
0
1 at 2798.617 kb on - strand, within HP15_2647 at 2798.633 kb on + strand, within HP15_2647 at 2798.904 kb on + strand, within HP15_2647 at 2798.991 kb on - strand at 2799.071 kb on - strand at 2799.130 kb on + strand at 2799.279 kb on - strand, within HP15_2648 at 2799.399 kb on - strand, within HP15_2648 at 2799.401 kb on + strand, within HP15_2648 at 2799.460 kb on + strand, within HP15_2648 at 2799.545 kb on - strand, within HP15_2648 at 2799.545 kb on - strand, within HP15_2648 at 2799.545 kb on - strand, within HP15_2648 at 2799.552 kb on - strand at 2799.918 kb on - strand, within HP15_2649 at 2799.924 kb on - strand, within HP15_2649 at 2800.014 kb on + strand, within HP15_2649 at 2800.022 kb on - strand, within HP15_2649 at 2800.120 kb on - strand, within HP15_2649 at 2800.212 kb on + strand, within HP15_2649 at 2800.305 kb on - strand, within HP15_2649 at 2800.600 kb on - strand, within HP15_2650 at 2800.664 kb on + strand, within HP15_2650 at 2800.765 kb on + strand, within HP15_2650 at 2800.773 kb on - strand, within HP15_2650 at 2800.829 kb on - strand at 2800.870 kb on + strand at 2800.918 kb on + strand at 2801.077 kb on - strand, within HP15_2651 at 2801.101 kb on + strand, within HP15_2651 at 2801.188 kb on - strand, within HP15_2651 at 2801.234 kb on + strand, within HP15_2651 at 2801.234 kb on + strand, within HP15_2651 at 2801.234 kb on + strand, within HP15_2651 at 2801.234 kb on + strand, within HP15_2651 at 2801.442 kb on + strand, within HP15_2651 at 2801.479 kb on + strand, within HP15_2651 at 2801.479 kb on + strand, within HP15_2651
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media remove 2,798,617 - HP15_2647 0.70 -0.5 2,798,633 + HP15_2647 0.71 +1.3 2,798,904 + HP15_2647 0.87 -1.8 2,798,991 - +0.7 2,799,071 - +0.4 2,799,130 + -0.5 2,799,279 - HP15_2648 0.30 -0.6 2,799,399 - HP15_2648 0.56 -0.4 2,799,401 + HP15_2648 0.57 +1.1 2,799,460 + HP15_2648 0.70 -1.1 2,799,545 - HP15_2648 0.89 -0.6 2,799,545 - HP15_2648 0.89 +1.1 2,799,545 - HP15_2648 0.89 +0.2 2,799,552 - -0.6 2,799,918 - HP15_2649 0.36 +0.8 2,799,924 - HP15_2649 0.36 +1.0 2,800,014 + HP15_2649 0.46 +0.3 2,800,022 - HP15_2649 0.47 +0.5 2,800,120 - HP15_2649 0.57 -0.4 2,800,212 + HP15_2649 0.67 +0.5 2,800,305 - HP15_2649 0.77 +0.8 2,800,600 - HP15_2650 0.29 +0.1 2,800,664 + HP15_2650 0.51 +0.3 2,800,765 + HP15_2650 0.86 +1.6 2,800,773 - HP15_2650 0.89 -0.3 2,800,829 - +0.0 2,800,870 + -0.3 2,800,918 + -1.6 2,801,077 - HP15_2651 0.15 -0.6 2,801,101 + HP15_2651 0.17 -0.2 2,801,188 - HP15_2651 0.25 +1.1 2,801,234 + HP15_2651 0.29 +0.3 2,801,234 + HP15_2651 0.29 -0.6 2,801,234 + HP15_2651 0.29 -1.6 2,801,234 + HP15_2651 0.29 -0.2 2,801,442 + HP15_2651 0.48 +1.0 2,801,479 + HP15_2651 0.52 -0.9 2,801,479 + HP15_2651 0.52 +1.0
Or see this region's nucleotide sequence