Experiment: DinoMM minimal media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2632 and HP15_2633 overlap by 29 nucleotides HP15_2633 and HP15_2634 are separated by 99 nucleotides HP15_2634 and HP15_2635 are separated by 6 nucleotides
HP15_2632: HP15_2632 - ribonuclease Z, at 2,783,366 to 2,784,445
_2632
HP15_2633: HP15_2633 - conserved hypothetical protein, secreted, at 2,784,417 to 2,785,247
_2633
HP15_2634: HP15_2634 - lipoprotein, at 2,785,347 to 2,786,054
_2634
HP15_2635: HP15_2635 - transcriptional regulator, LysR-family protein, at 2,786,061 to 2,786,960
_2635
Position (kb)
2785
2786
2787 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2784.412 kb on + strand at 2784.560 kb on + strand, within HP15_2633 at 2784.740 kb on - strand, within HP15_2633 at 2784.748 kb on + strand, within HP15_2633 at 2784.756 kb on - strand, within HP15_2633 at 2784.820 kb on + strand, within HP15_2633 at 2784.828 kb on - strand, within HP15_2633 at 2784.828 kb on - strand, within HP15_2633 at 2784.870 kb on + strand, within HP15_2633 at 2784.886 kb on - strand, within HP15_2633 at 2784.936 kb on + strand, within HP15_2633 at 2784.936 kb on + strand, within HP15_2633 at 2784.936 kb on + strand, within HP15_2633 at 2784.944 kb on - strand, within HP15_2633 at 2784.946 kb on + strand, within HP15_2633 at 2784.946 kb on + strand, within HP15_2633 at 2784.954 kb on - strand, within HP15_2633 at 2785.021 kb on - strand, within HP15_2633 at 2785.115 kb on - strand, within HP15_2633 at 2785.118 kb on + strand, within HP15_2633 at 2785.192 kb on - strand at 2785.587 kb on + strand, within HP15_2634 at 2785.661 kb on + strand, within HP15_2634 at 2785.705 kb on + strand, within HP15_2634 at 2785.732 kb on + strand, within HP15_2634 at 2785.743 kb on + strand, within HP15_2634 at 2785.783 kb on + strand, within HP15_2634 at 2785.813 kb on + strand, within HP15_2634 at 2785.961 kb on + strand, within HP15_2634 at 2785.964 kb on - strand, within HP15_2634 at 2785.964 kb on - strand, within HP15_2634 at 2786.036 kb on - strand at 2786.115 kb on - strand at 2786.136 kb on + strand at 2786.220 kb on + strand, within HP15_2635 at 2786.230 kb on - strand, within HP15_2635 at 2786.275 kb on + strand, within HP15_2635 at 2786.313 kb on - strand, within HP15_2635 at 2786.350 kb on - strand, within HP15_2635 at 2786.451 kb on + strand, within HP15_2635 at 2786.613 kb on + strand, within HP15_2635 at 2786.698 kb on + strand, within HP15_2635 at 2786.715 kb on - strand, within HP15_2635 at 2786.785 kb on + strand, within HP15_2635 at 2786.830 kb on + strand, within HP15_2635 at 2786.830 kb on + strand, within HP15_2635 at 2786.867 kb on - strand, within HP15_2635
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media remove 2,784,412 + -2.0 2,784,560 + HP15_2633 0.17 -0.6 2,784,740 - HP15_2633 0.39 +0.2 2,784,748 + HP15_2633 0.40 -0.6 2,784,756 - HP15_2633 0.41 -0.9 2,784,820 + HP15_2633 0.48 +0.9 2,784,828 - HP15_2633 0.49 -0.5 2,784,828 - HP15_2633 0.49 +1.1 2,784,870 + HP15_2633 0.55 -1.8 2,784,886 - HP15_2633 0.56 -1.0 2,784,936 + HP15_2633 0.62 +1.3 2,784,936 + HP15_2633 0.62 +1.9 2,784,936 + HP15_2633 0.62 +0.9 2,784,944 - HP15_2633 0.63 -0.5 2,784,946 + HP15_2633 0.64 -1.4 2,784,946 + HP15_2633 0.64 -1.0 2,784,954 - HP15_2633 0.65 -0.9 2,785,021 - HP15_2633 0.73 +0.4 2,785,115 - HP15_2633 0.84 +1.1 2,785,118 + HP15_2633 0.84 -0.6 2,785,192 - -1.2 2,785,587 + HP15_2634 0.34 -0.0 2,785,661 + HP15_2634 0.44 +0.7 2,785,705 + HP15_2634 0.51 +1.1 2,785,732 + HP15_2634 0.54 +0.9 2,785,743 + HP15_2634 0.56 +0.2 2,785,783 + HP15_2634 0.62 +1.2 2,785,813 + HP15_2634 0.66 -1.9 2,785,961 + HP15_2634 0.87 +0.2 2,785,964 - HP15_2634 0.87 +1.2 2,785,964 - HP15_2634 0.87 -0.2 2,786,036 - -1.4 2,786,115 - +0.3 2,786,136 + +0.6 2,786,220 + HP15_2635 0.18 +0.1 2,786,230 - HP15_2635 0.19 +0.1 2,786,275 + HP15_2635 0.24 -0.2 2,786,313 - HP15_2635 0.28 -0.8 2,786,350 - HP15_2635 0.32 +1.1 2,786,451 + HP15_2635 0.43 +0.2 2,786,613 + HP15_2635 0.61 +0.5 2,786,698 + HP15_2635 0.71 -0.3 2,786,715 - HP15_2635 0.73 -1.4 2,786,785 + HP15_2635 0.80 +0.5 2,786,830 + HP15_2635 0.85 +1.2 2,786,830 + HP15_2635 0.85 +1.6 2,786,867 - HP15_2635 0.90 -0.3
Or see this region's nucleotide sequence