Experiment: DinoMM minimal media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2451 and HP15_2452 overlap by 4 nucleotides HP15_2452 and HP15_2453 are separated by 2 nucleotides HP15_2453 and HP15_2454 overlap by 1 nucleotides HP15_2454 and HP15_2455 are separated by 95 nucleotides
HP15_2451: HP15_2451 - ribonuclease, Rne/Rng family, at 2,590,268 to 2,591,749
_2451
HP15_2452: HP15_2452 - Maf-like protein, at 2,591,746 to 2,592,351
_2452
HP15_2453: HP15_2453 - rod shape-determining protein MreD, at 2,592,354 to 2,592,830
_2453
HP15_2454: HP15_2454 - rod shape-determining protein MreC-like protein, at 2,592,830 to 2,593,660
_2454
HP15_2455: HP15_2455 - rod shaping protein MreB, at 2,593,756 to 2,594,799
_2455
Position (kb)
2592
2593 Strain fitness (log2 ratio)
-1
0
1
2 at 2591.404 kb on + strand, within HP15_2451 at 2591.412 kb on - strand, within HP15_2451 at 2592.003 kb on - strand, within HP15_2452 at 2592.003 kb on - strand, within HP15_2452 at 2592.008 kb on - strand, within HP15_2452 at 2592.031 kb on + strand, within HP15_2452 at 2592.073 kb on + strand, within HP15_2452 at 2592.179 kb on - strand, within HP15_2452 at 2592.205 kb on + strand, within HP15_2452 at 2592.360 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media remove 2,591,404 + HP15_2451 0.77 -1.3 2,591,412 - HP15_2451 0.77 -0.6 2,592,003 - HP15_2452 0.42 -0.7 2,592,003 - HP15_2452 0.42 -0.3 2,592,008 - HP15_2452 0.43 -1.6 2,592,031 + HP15_2452 0.47 +0.6 2,592,073 + HP15_2452 0.54 +2.0 2,592,179 - HP15_2452 0.71 +0.1 2,592,205 + HP15_2452 0.76 +0.2 2,592,360 - +0.2
Or see this region's nucleotide sequence