Experiment: DinoMM minimal media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2345 and HP15_tRNA45 are separated by 41 nucleotides HP15_tRNA45 and HP15_tRNA46 are separated by 18 nucleotides HP15_tRNA46 and HP15_tRNA47 are separated by 67 nucleotides HP15_tRNA47 and HP15_2346 are separated by 161 nucleotides HP15_2346 and HP15_2347 are separated by 26 nucleotides
HP15_2345: HP15_2345 - 3-oxoacyl-(acyl-carrier protein) reductase, at 2,468,405 to 2,469,811
_2345
HP15_tRNA45: HP15_tRNA45 - tRNA-Val, at 2,469,853 to 2,469,928
_tRNA45
HP15_tRNA46: HP15_tRNA46 - tRNA-Asp, at 2,469,947 to 2,470,023
_tRNA46
HP15_tRNA47: HP15_tRNA47 - tRNA-Val, at 2,470,091 to 2,470,166
_tRNA47
HP15_2346: HP15_2346 - conserved hypothetical protein, at 2,470,328 to 2,470,609
_2346
HP15_2347: HP15_2347 - conserved hypothetical protein, at 2,470,636 to 2,471,508
_2347
Position (kb)
2470
2471 Strain fitness (log2 ratio)
-2
-1
0
1 at 2469.343 kb on - strand, within HP15_2345 at 2469.387 kb on - strand, within HP15_2345 at 2469.419 kb on + strand, within HP15_2345 at 2469.442 kb on - strand, within HP15_2345 at 2469.629 kb on + strand, within HP15_2345 at 2469.653 kb on + strand, within HP15_2345 at 2469.687 kb on + strand at 2469.699 kb on - strand at 2470.377 kb on + strand, within HP15_2346 at 2470.923 kb on + strand, within HP15_2347 at 2471.124 kb on + strand, within HP15_2347 at 2471.132 kb on - strand, within HP15_2347 at 2471.138 kb on - strand, within HP15_2347 at 2471.149 kb on + strand, within HP15_2347 at 2471.157 kb on - strand, within HP15_2347 at 2471.173 kb on - strand, within HP15_2347 at 2471.198 kb on - strand, within HP15_2347 at 2471.198 kb on - strand, within HP15_2347 at 2471.314 kb on + strand, within HP15_2347 at 2471.314 kb on + strand, within HP15_2347 at 2471.322 kb on - strand, within HP15_2347 at 2471.322 kb on - strand, within HP15_2347 at 2471.331 kb on + strand, within HP15_2347 at 2471.493 kb on + strand at 2471.555 kb on - strand at 2471.583 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media remove 2,469,343 - HP15_2345 0.67 +0.9 2,469,387 - HP15_2345 0.70 +0.0 2,469,419 + HP15_2345 0.72 +0.9 2,469,442 - HP15_2345 0.74 -1.8 2,469,629 + HP15_2345 0.87 -0.3 2,469,653 + HP15_2345 0.89 +0.8 2,469,687 + +0.8 2,469,699 - -1.7 2,470,377 + HP15_2346 0.17 +0.0 2,470,923 + HP15_2347 0.33 -0.1 2,471,124 + HP15_2347 0.56 +1.0 2,471,132 - HP15_2347 0.57 -0.3 2,471,138 - HP15_2347 0.58 +0.2 2,471,149 + HP15_2347 0.59 -1.7 2,471,157 - HP15_2347 0.60 -0.5 2,471,173 - HP15_2347 0.62 -0.4 2,471,198 - HP15_2347 0.64 +1.1 2,471,198 - HP15_2347 0.64 +1.5 2,471,314 + HP15_2347 0.78 -0.1 2,471,314 + HP15_2347 0.78 -0.8 2,471,322 - HP15_2347 0.79 +1.2 2,471,322 - HP15_2347 0.79 -0.3 2,471,331 + HP15_2347 0.80 -1.4 2,471,493 + -0.3 2,471,555 - +1.3 2,471,583 - -1.1
Or see this region's nucleotide sequence