Experiment: DinoMM minimal media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2241 and HP15_2242 are separated by 42 nucleotides HP15_2242 and HP15_2243 are separated by 11 nucleotides
HP15_2241: HP15_2241 - transaldolase, at 2,362,342 to 2,363,307
_2241
HP15_2242: HP15_2242 - protein containing DUF1332, at 2,363,350 to 2,363,799
_2242
HP15_2243: HP15_2243 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 2,363,811 to 2,364,938
_2243
Position (kb)
2363
2364 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2362.406 kb on + strand at 2362.458 kb on + strand, within HP15_2241 at 2362.466 kb on - strand at 2362.497 kb on + strand, within HP15_2241 at 2362.505 kb on - strand, within HP15_2241 at 2362.505 kb on - strand, within HP15_2241 at 2362.693 kb on - strand, within HP15_2241 at 2362.705 kb on - strand, within HP15_2241 at 2362.745 kb on - strand, within HP15_2241 at 2362.766 kb on - strand, within HP15_2241 at 2362.797 kb on - strand, within HP15_2241 at 2362.848 kb on + strand, within HP15_2241 at 2362.864 kb on + strand, within HP15_2241 at 2362.910 kb on - strand, within HP15_2241 at 2363.075 kb on + strand, within HP15_2241 at 2363.075 kb on + strand, within HP15_2241 at 2363.083 kb on - strand, within HP15_2241 at 2363.083 kb on - strand, within HP15_2241 at 2363.083 kb on - strand, within HP15_2241 at 2363.083 kb on - strand, within HP15_2241 at 2363.094 kb on - strand, within HP15_2241 at 2363.179 kb on + strand, within HP15_2241 at 2363.227 kb on - strand at 2363.247 kb on + strand at 2363.292 kb on + strand at 2363.322 kb on - strand at 2363.404 kb on + strand, within HP15_2242 at 2363.469 kb on + strand, within HP15_2242 at 2363.525 kb on + strand, within HP15_2242 at 2363.572 kb on - strand, within HP15_2242 at 2363.843 kb on + strand at 2363.916 kb on + strand at 2363.928 kb on + strand, within HP15_2243 at 2363.929 kb on + strand, within HP15_2243 at 2364.094 kb on - strand, within HP15_2243 at 2364.137 kb on + strand, within HP15_2243 at 2364.239 kb on + strand, within HP15_2243 at 2364.469 kb on + strand, within HP15_2243 at 2364.667 kb on + strand, within HP15_2243 at 2364.736 kb on + strand, within HP15_2243
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media remove 2,362,406 + +1.0 2,362,458 + HP15_2241 0.12 +1.4 2,362,466 - +1.0 2,362,497 + HP15_2241 0.16 -1.3 2,362,505 - HP15_2241 0.17 -0.6 2,362,505 - HP15_2241 0.17 -0.4 2,362,693 - HP15_2241 0.36 -0.4 2,362,705 - HP15_2241 0.38 +1.1 2,362,745 - HP15_2241 0.42 +1.0 2,362,766 - HP15_2241 0.44 -1.3 2,362,797 - HP15_2241 0.47 -0.3 2,362,848 + HP15_2241 0.52 -0.4 2,362,864 + HP15_2241 0.54 -0.6 2,362,910 - HP15_2241 0.59 +0.3 2,363,075 + HP15_2241 0.76 +1.0 2,363,075 + HP15_2241 0.76 -0.7 2,363,083 - HP15_2241 0.77 +2.0 2,363,083 - HP15_2241 0.77 -3.3 2,363,083 - HP15_2241 0.77 -0.7 2,363,083 - HP15_2241 0.77 +0.2 2,363,094 - HP15_2241 0.78 +0.2 2,363,179 + HP15_2241 0.87 -0.4 2,363,227 - +1.0 2,363,247 + -1.1 2,363,292 + -2.0 2,363,322 - -0.5 2,363,404 + HP15_2242 0.12 -3.0 2,363,469 + HP15_2242 0.26 -0.5 2,363,525 + HP15_2242 0.39 -1.9 2,363,572 - HP15_2242 0.49 +2.6 2,363,843 + -0.8 2,363,916 + +0.7 2,363,928 + HP15_2243 0.10 -0.1 2,363,929 + HP15_2243 0.10 -0.2 2,364,094 - HP15_2243 0.25 +1.4 2,364,137 + HP15_2243 0.29 -0.4 2,364,239 + HP15_2243 0.38 +0.5 2,364,469 + HP15_2243 0.58 -1.0 2,364,667 + HP15_2243 0.76 +0.2 2,364,736 + HP15_2243 0.82 +1.1
Or see this region's nucleotide sequence