Strain Fitness in Marinobacter adhaerens HP15 around HP15_1927

Experiment: DinoMM minimal media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1926 and HP15_1927 are separated by 23 nucleotidesHP15_1927 and HP15_1928 are separated by 28 nucleotides HP15_1926: HP15_1926 - PEP-CTERM locus, polysaccharide deactylase, at 2,042,772 to 2,043,773 _1926 HP15_1927: HP15_1927 - AAA ATPase, at 2,043,797 to 2,044,846 _1927 HP15_1928: HP15_1928 - 2-methylcitrate dehydratase PrpD, at 2,044,875 to 2,046,359 _1928 Position (kb) 2043 2044 2045Strain fitness (log2 ratio) -2 -1 0 1 2at 2042.799 kb on - strandat 2042.919 kb on + strand, within HP15_1926at 2042.956 kb on + strand, within HP15_1926at 2043.212 kb on + strand, within HP15_1926at 2043.229 kb on - strand, within HP15_1926at 2043.449 kb on - strand, within HP15_1926at 2043.479 kb on + strand, within HP15_1926at 2043.480 kb on - strand, within HP15_1926at 2043.648 kb on - strand, within HP15_1926at 2043.650 kb on + strand, within HP15_1926at 2043.650 kb on + strand, within HP15_1926at 2043.658 kb on - strand, within HP15_1926at 2043.717 kb on - strandat 2043.801 kb on + strandat 2044.002 kb on - strand, within HP15_1927at 2044.013 kb on - strand, within HP15_1927at 2044.058 kb on + strand, within HP15_1927at 2044.067 kb on - strand, within HP15_1927at 2044.117 kb on - strand, within HP15_1927at 2044.229 kb on - strand, within HP15_1927at 2044.274 kb on - strand, within HP15_1927at 2044.292 kb on - strand, within HP15_1927at 2044.359 kb on + strand, within HP15_1927at 2044.377 kb on + strand, within HP15_1927at 2044.438 kb on + strand, within HP15_1927at 2044.659 kb on + strand, within HP15_1927at 2044.677 kb on - strand, within HP15_1927at 2044.865 kb on + strandat 2044.880 kb on - strandat 2045.230 kb on + strand, within HP15_1928at 2045.736 kb on - strand, within HP15_1928at 2045.760 kb on + strand, within HP15_1928

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media
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2,042,799 - +1.0
2,042,919 + HP15_1926 0.15 +0.2
2,042,956 + HP15_1926 0.18 +1.9
2,043,212 + HP15_1926 0.44 -0.6
2,043,229 - HP15_1926 0.46 +0.3
2,043,449 - HP15_1926 0.68 -2.3
2,043,479 + HP15_1926 0.71 -0.8
2,043,480 - HP15_1926 0.71 +0.2
2,043,648 - HP15_1926 0.87 +1.1
2,043,650 + HP15_1926 0.88 -1.6
2,043,650 + HP15_1926 0.88 -1.1
2,043,658 - HP15_1926 0.88 +0.3
2,043,717 - -0.5
2,043,801 + +1.0
2,044,002 - HP15_1927 0.20 +0.6
2,044,013 - HP15_1927 0.21 -0.4
2,044,058 + HP15_1927 0.25 -0.3
2,044,067 - HP15_1927 0.26 -0.6
2,044,117 - HP15_1927 0.30 -0.8
2,044,229 - HP15_1927 0.41 +1.1
2,044,274 - HP15_1927 0.45 -1.0
2,044,292 - HP15_1927 0.47 -0.5
2,044,359 + HP15_1927 0.54 +0.7
2,044,377 + HP15_1927 0.55 -0.5
2,044,438 + HP15_1927 0.61 +0.3
2,044,659 + HP15_1927 0.82 +0.6
2,044,677 - HP15_1927 0.84 -0.8
2,044,865 + -0.1
2,044,880 - -0.3
2,045,230 + HP15_1928 0.24 +1.3
2,045,736 - HP15_1928 0.58 +1.1
2,045,760 + HP15_1928 0.60 +0.6

Or see this region's nucleotide sequence