Experiment: DinoMM minimal media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1926 and HP15_1927 are separated by 23 nucleotides HP15_1927 and HP15_1928 are separated by 28 nucleotides
HP15_1926: HP15_1926 - PEP-CTERM locus, polysaccharide deactylase, at 2,042,772 to 2,043,773
_1926
HP15_1927: HP15_1927 - AAA ATPase, at 2,043,797 to 2,044,846
_1927
HP15_1928: HP15_1928 - 2-methylcitrate dehydratase PrpD, at 2,044,875 to 2,046,359
_1928
Position (kb)
2043
2044
2045 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2042.799 kb on - strand at 2042.919 kb on + strand, within HP15_1926 at 2042.956 kb on + strand, within HP15_1926 at 2043.212 kb on + strand, within HP15_1926 at 2043.229 kb on - strand, within HP15_1926 at 2043.449 kb on - strand, within HP15_1926 at 2043.479 kb on + strand, within HP15_1926 at 2043.480 kb on - strand, within HP15_1926 at 2043.648 kb on - strand, within HP15_1926 at 2043.650 kb on + strand, within HP15_1926 at 2043.650 kb on + strand, within HP15_1926 at 2043.658 kb on - strand, within HP15_1926 at 2043.717 kb on - strand at 2043.801 kb on + strand at 2044.002 kb on - strand, within HP15_1927 at 2044.013 kb on - strand, within HP15_1927 at 2044.058 kb on + strand, within HP15_1927 at 2044.067 kb on - strand, within HP15_1927 at 2044.117 kb on - strand, within HP15_1927 at 2044.229 kb on - strand, within HP15_1927 at 2044.274 kb on - strand, within HP15_1927 at 2044.292 kb on - strand, within HP15_1927 at 2044.359 kb on + strand, within HP15_1927 at 2044.377 kb on + strand, within HP15_1927 at 2044.438 kb on + strand, within HP15_1927 at 2044.659 kb on + strand, within HP15_1927 at 2044.677 kb on - strand, within HP15_1927 at 2044.865 kb on + strand at 2044.880 kb on - strand at 2045.230 kb on + strand, within HP15_1928 at 2045.736 kb on - strand, within HP15_1928 at 2045.760 kb on + strand, within HP15_1928
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media remove 2,042,799 - +1.0 2,042,919 + HP15_1926 0.15 +0.2 2,042,956 + HP15_1926 0.18 +1.9 2,043,212 + HP15_1926 0.44 -0.6 2,043,229 - HP15_1926 0.46 +0.3 2,043,449 - HP15_1926 0.68 -2.3 2,043,479 + HP15_1926 0.71 -0.8 2,043,480 - HP15_1926 0.71 +0.2 2,043,648 - HP15_1926 0.87 +1.1 2,043,650 + HP15_1926 0.88 -1.6 2,043,650 + HP15_1926 0.88 -1.1 2,043,658 - HP15_1926 0.88 +0.3 2,043,717 - -0.5 2,043,801 + +1.0 2,044,002 - HP15_1927 0.20 +0.6 2,044,013 - HP15_1927 0.21 -0.4 2,044,058 + HP15_1927 0.25 -0.3 2,044,067 - HP15_1927 0.26 -0.6 2,044,117 - HP15_1927 0.30 -0.8 2,044,229 - HP15_1927 0.41 +1.1 2,044,274 - HP15_1927 0.45 -1.0 2,044,292 - HP15_1927 0.47 -0.5 2,044,359 + HP15_1927 0.54 +0.7 2,044,377 + HP15_1927 0.55 -0.5 2,044,438 + HP15_1927 0.61 +0.3 2,044,659 + HP15_1927 0.82 +0.6 2,044,677 - HP15_1927 0.84 -0.8 2,044,865 + -0.1 2,044,880 - -0.3 2,045,230 + HP15_1928 0.24 +1.3 2,045,736 - HP15_1928 0.58 +1.1 2,045,760 + HP15_1928 0.60 +0.6
Or see this region's nucleotide sequence