Strain Fitness in Marinobacter adhaerens HP15 around HP15_1921

Experiment: DinoMM minimal media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1920 and HP15_1921 are separated by 29 nucleotidesHP15_1921 and HP15_1922 overlap by 4 nucleotidesHP15_1922 and HP15_1923 overlap by 11 nucleotides HP15_1920: HP15_1920 - WalW protein, at 2,035,687 to 2,036,685 _1920 HP15_1921: HP15_1921 - conserved hypothetical protein, secreted, at 2,036,715 to 2,038,073 _1921 HP15_1922: HP15_1922 - polysaccharide biosynthesis protein, at 2,038,070 to 2,038,948 _1922 HP15_1923: HP15_1923 - PEP-CTERM locus polysaccharide chain length determinant, at 2,038,938 to 2,040,518 _1923 Position (kb) 2036 2037 2038 2039Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2035.853 kb on - strand, within HP15_1920at 2036.018 kb on + strand, within HP15_1920at 2036.031 kb on - strand, within HP15_1920at 2036.031 kb on - strand, within HP15_1920at 2036.031 kb on - strand, within HP15_1920at 2036.195 kb on - strand, within HP15_1920at 2036.260 kb on - strand, within HP15_1920at 2036.298 kb on + strand, within HP15_1920at 2036.551 kb on + strand, within HP15_1920at 2036.624 kb on + strandat 2036.711 kb on - strandat 2036.783 kb on - strandat 2036.800 kb on - strandat 2036.897 kb on - strand, within HP15_1921at 2036.950 kb on - strand, within HP15_1921at 2037.192 kb on + strand, within HP15_1921at 2037.249 kb on - strand, within HP15_1921at 2037.487 kb on + strand, within HP15_1921at 2037.495 kb on - strand, within HP15_1921at 2037.495 kb on - strand, within HP15_1921at 2037.495 kb on - strand, within HP15_1921at 2037.495 kb on - strand, within HP15_1921at 2037.495 kb on - strand, within HP15_1921at 2037.495 kb on - strand, within HP15_1921at 2037.520 kb on + strand, within HP15_1921at 2037.548 kb on + strand, within HP15_1921at 2037.548 kb on + strand, within HP15_1921at 2037.556 kb on - strand, within HP15_1921at 2037.566 kb on - strand, within HP15_1921at 2037.579 kb on + strand, within HP15_1921at 2037.579 kb on + strand, within HP15_1921at 2037.587 kb on - strand, within HP15_1921at 2037.606 kb on + strand, within HP15_1921at 2037.670 kb on + strand, within HP15_1921at 2037.780 kb on + strand, within HP15_1921at 2037.814 kb on + strand, within HP15_1921at 2037.962 kb on + strandat 2037.962 kb on - strandat 2038.017 kb on + strandat 2038.113 kb on - strandat 2038.204 kb on + strand, within HP15_1922at 2038.224 kb on - strand, within HP15_1922at 2038.355 kb on - strand, within HP15_1922at 2038.585 kb on + strand, within HP15_1922at 2038.587 kb on + strand, within HP15_1922at 2038.735 kb on + strand, within HP15_1922at 2038.853 kb on - strand, within HP15_1922at 2038.853 kb on - strand, within HP15_1922at 2038.919 kb on - strandat 2038.923 kb on + strandat 2039.002 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media
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2,035,853 - HP15_1920 0.17 +0.2
2,036,018 + HP15_1920 0.33 -0.4
2,036,031 - HP15_1920 0.34 +1.0
2,036,031 - HP15_1920 0.34 +1.8
2,036,031 - HP15_1920 0.34 -0.2
2,036,195 - HP15_1920 0.51 -0.4
2,036,260 - HP15_1920 0.57 -0.8
2,036,298 + HP15_1920 0.61 +0.9
2,036,551 + HP15_1920 0.86 -0.7
2,036,624 + -0.4
2,036,711 - -0.2
2,036,783 - -0.4
2,036,800 - -0.9
2,036,897 - HP15_1921 0.13 +0.6
2,036,950 - HP15_1921 0.17 -0.1
2,037,192 + HP15_1921 0.35 -2.3
2,037,249 - HP15_1921 0.39 +0.3
2,037,487 + HP15_1921 0.57 +0.1
2,037,495 - HP15_1921 0.57 +1.3
2,037,495 - HP15_1921 0.57 +0.3
2,037,495 - HP15_1921 0.57 +1.5
2,037,495 - HP15_1921 0.57 -0.7
2,037,495 - HP15_1921 0.57 +0.5
2,037,495 - HP15_1921 0.57 +1.2
2,037,520 + HP15_1921 0.59 -1.6
2,037,548 + HP15_1921 0.61 +1.9
2,037,548 + HP15_1921 0.61 -0.4
2,037,556 - HP15_1921 0.62 +0.2
2,037,566 - HP15_1921 0.63 +0.1
2,037,579 + HP15_1921 0.64 +0.2
2,037,579 + HP15_1921 0.64 +1.8
2,037,587 - HP15_1921 0.64 +0.2
2,037,606 + HP15_1921 0.66 +1.5
2,037,670 + HP15_1921 0.70 -0.1
2,037,780 + HP15_1921 0.78 -0.2
2,037,814 + HP15_1921 0.81 +0.5
2,037,962 + -1.3
2,037,962 - -0.7
2,038,017 + -0.3
2,038,113 - +1.6
2,038,204 + HP15_1922 0.15 +0.9
2,038,224 - HP15_1922 0.18 +0.2
2,038,355 - HP15_1922 0.32 +0.1
2,038,585 + HP15_1922 0.59 +0.0
2,038,587 + HP15_1922 0.59 -0.0
2,038,735 + HP15_1922 0.76 +1.7
2,038,853 - HP15_1922 0.89 -0.3
2,038,853 - HP15_1922 0.89 +3.1
2,038,919 - +1.0
2,038,923 + +1.9
2,039,002 - +0.9

Or see this region's nucleotide sequence