Experiment: DinoMM minimal media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1920 and HP15_1921 are separated by 29 nucleotides HP15_1921 and HP15_1922 overlap by 4 nucleotides HP15_1922 and HP15_1923 overlap by 11 nucleotides
HP15_1920: HP15_1920 - WalW protein, at 2,035,687 to 2,036,685
_1920
HP15_1921: HP15_1921 - conserved hypothetical protein, secreted, at 2,036,715 to 2,038,073
_1921
HP15_1922: HP15_1922 - polysaccharide biosynthesis protein, at 2,038,070 to 2,038,948
_1922
HP15_1923: HP15_1923 - PEP-CTERM locus polysaccharide chain length determinant, at 2,038,938 to 2,040,518
_1923
Position (kb)
2036
2037
2038
2039 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2035.853 kb on - strand, within HP15_1920 at 2036.018 kb on + strand, within HP15_1920 at 2036.031 kb on - strand, within HP15_1920 at 2036.031 kb on - strand, within HP15_1920 at 2036.031 kb on - strand, within HP15_1920 at 2036.195 kb on - strand, within HP15_1920 at 2036.260 kb on - strand, within HP15_1920 at 2036.298 kb on + strand, within HP15_1920 at 2036.551 kb on + strand, within HP15_1920 at 2036.624 kb on + strand at 2036.711 kb on - strand at 2036.783 kb on - strand at 2036.800 kb on - strand at 2036.897 kb on - strand, within HP15_1921 at 2036.950 kb on - strand, within HP15_1921 at 2037.192 kb on + strand, within HP15_1921 at 2037.249 kb on - strand, within HP15_1921 at 2037.487 kb on + strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.520 kb on + strand, within HP15_1921 at 2037.548 kb on + strand, within HP15_1921 at 2037.548 kb on + strand, within HP15_1921 at 2037.556 kb on - strand, within HP15_1921 at 2037.566 kb on - strand, within HP15_1921 at 2037.579 kb on + strand, within HP15_1921 at 2037.579 kb on + strand, within HP15_1921 at 2037.587 kb on - strand, within HP15_1921 at 2037.606 kb on + strand, within HP15_1921 at 2037.670 kb on + strand, within HP15_1921 at 2037.780 kb on + strand, within HP15_1921 at 2037.814 kb on + strand, within HP15_1921 at 2037.962 kb on + strand at 2037.962 kb on - strand at 2038.017 kb on + strand at 2038.113 kb on - strand at 2038.204 kb on + strand, within HP15_1922 at 2038.224 kb on - strand, within HP15_1922 at 2038.355 kb on - strand, within HP15_1922 at 2038.585 kb on + strand, within HP15_1922 at 2038.587 kb on + strand, within HP15_1922 at 2038.735 kb on + strand, within HP15_1922 at 2038.853 kb on - strand, within HP15_1922 at 2038.853 kb on - strand, within HP15_1922 at 2038.919 kb on - strand at 2038.923 kb on + strand at 2039.002 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media remove 2,035,853 - HP15_1920 0.17 +0.2 2,036,018 + HP15_1920 0.33 -0.4 2,036,031 - HP15_1920 0.34 +1.0 2,036,031 - HP15_1920 0.34 +1.8 2,036,031 - HP15_1920 0.34 -0.2 2,036,195 - HP15_1920 0.51 -0.4 2,036,260 - HP15_1920 0.57 -0.8 2,036,298 + HP15_1920 0.61 +0.9 2,036,551 + HP15_1920 0.86 -0.7 2,036,624 + -0.4 2,036,711 - -0.2 2,036,783 - -0.4 2,036,800 - -0.9 2,036,897 - HP15_1921 0.13 +0.6 2,036,950 - HP15_1921 0.17 -0.1 2,037,192 + HP15_1921 0.35 -2.3 2,037,249 - HP15_1921 0.39 +0.3 2,037,487 + HP15_1921 0.57 +0.1 2,037,495 - HP15_1921 0.57 +1.3 2,037,495 - HP15_1921 0.57 +0.3 2,037,495 - HP15_1921 0.57 +1.5 2,037,495 - HP15_1921 0.57 -0.7 2,037,495 - HP15_1921 0.57 +0.5 2,037,495 - HP15_1921 0.57 +1.2 2,037,520 + HP15_1921 0.59 -1.6 2,037,548 + HP15_1921 0.61 +1.9 2,037,548 + HP15_1921 0.61 -0.4 2,037,556 - HP15_1921 0.62 +0.2 2,037,566 - HP15_1921 0.63 +0.1 2,037,579 + HP15_1921 0.64 +0.2 2,037,579 + HP15_1921 0.64 +1.8 2,037,587 - HP15_1921 0.64 +0.2 2,037,606 + HP15_1921 0.66 +1.5 2,037,670 + HP15_1921 0.70 -0.1 2,037,780 + HP15_1921 0.78 -0.2 2,037,814 + HP15_1921 0.81 +0.5 2,037,962 + -1.3 2,037,962 - -0.7 2,038,017 + -0.3 2,038,113 - +1.6 2,038,204 + HP15_1922 0.15 +0.9 2,038,224 - HP15_1922 0.18 +0.2 2,038,355 - HP15_1922 0.32 +0.1 2,038,585 + HP15_1922 0.59 +0.0 2,038,587 + HP15_1922 0.59 -0.0 2,038,735 + HP15_1922 0.76 +1.7 2,038,853 - HP15_1922 0.89 -0.3 2,038,853 - HP15_1922 0.89 +3.1 2,038,919 - +1.0 2,038,923 + +1.9 2,039,002 - +0.9
Or see this region's nucleotide sequence