Experiment: DinoMM minimal media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1570 and HP15_1571 are separated by 2 nucleotides HP15_1571 and HP15_1572 overlap by 4 nucleotides HP15_1572 and HP15_tRNA31 are separated by 224 nucleotides HP15_tRNA31 and HP15_tRNA32 are separated by 60 nucleotides HP15_tRNA32 and HP15_1573 are separated by 168 nucleotides
HP15_1570: HP15_1570 - mammalian cell entry related domain protein, at 1,650,654 to 1,651,592
_1570
HP15_1571: HP15_1571 - ATP-binding component of ABC transporter, at 1,651,595 to 1,652,434
_1571
HP15_1572: HP15_1572 - ABC transporter, permease protein, at 1,652,431 to 1,653,597
_1572
HP15_tRNA31: HP15_tRNA31 - tRNA-Gly, at 1,653,822 to 1,653,897
_tRNA31
HP15_tRNA32: HP15_tRNA32 - tRNA-Cys, at 1,653,958 to 1,654,031
_tRNA32
HP15_1573: HP15_1573 - formate dehydrogenase, beta subunit, at 1,654,200 to 1,655,915
_1573
Position (kb)
1652
1653
1654 Strain fitness (log2 ratio)
-1
0
1 at 1651.432 kb on + strand, within HP15_1570 at 1651.440 kb on - strand, within HP15_1570 at 1651.571 kb on + strand at 1651.671 kb on - strand at 1651.739 kb on - strand, within HP15_1571 at 1651.786 kb on + strand, within HP15_1571 at 1651.794 kb on - strand, within HP15_1571 at 1651.794 kb on - strand, within HP15_1571 at 1651.823 kb on + strand, within HP15_1571 at 1651.876 kb on + strand, within HP15_1571 at 1652.016 kb on + strand, within HP15_1571 at 1652.106 kb on + strand, within HP15_1571 at 1652.129 kb on + strand, within HP15_1571 at 1652.152 kb on - strand, within HP15_1571 at 1652.152 kb on - strand, within HP15_1571 at 1652.327 kb on + strand, within HP15_1571 at 1652.460 kb on - strand at 1652.494 kb on + strand at 1652.523 kb on + strand at 1652.665 kb on - strand, within HP15_1572 at 1652.665 kb on - strand, within HP15_1572 at 1652.675 kb on + strand, within HP15_1572 at 1652.675 kb on + strand, within HP15_1572 at 1652.713 kb on - strand, within HP15_1572 at 1652.808 kb on + strand, within HP15_1572 at 1652.809 kb on - strand, within HP15_1572 at 1652.844 kb on + strand, within HP15_1572 at 1652.996 kb on - strand, within HP15_1572 at 1653.121 kb on + strand, within HP15_1572 at 1653.121 kb on + strand, within HP15_1572 at 1653.231 kb on + strand, within HP15_1572 at 1653.530 kb on - strand at 1653.582 kb on + strand at 1653.582 kb on + strand at 1653.590 kb on - strand at 1653.646 kb on - strand at 1654.562 kb on + strand, within HP15_1573 at 1654.562 kb on + strand, within HP15_1573 at 1654.582 kb on + strand, within HP15_1573 at 1654.593 kb on + strand, within HP15_1573 at 1654.593 kb on + strand, within HP15_1573
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media remove 1,651,432 + HP15_1570 0.83 +1.0 1,651,440 - HP15_1570 0.84 -0.3 1,651,571 + +1.4 1,651,671 - +0.9 1,651,739 - HP15_1571 0.17 +0.9 1,651,786 + HP15_1571 0.23 +1.0 1,651,794 - HP15_1571 0.24 +1.4 1,651,794 - HP15_1571 0.24 -0.6 1,651,823 + HP15_1571 0.27 -0.2 1,651,876 + HP15_1571 0.33 +1.0 1,652,016 + HP15_1571 0.50 -0.6 1,652,106 + HP15_1571 0.61 -0.2 1,652,129 + HP15_1571 0.64 -0.3 1,652,152 - HP15_1571 0.66 -1.1 1,652,152 - HP15_1571 0.66 -1.3 1,652,327 + HP15_1571 0.87 +0.7 1,652,460 - -0.8 1,652,494 + +1.0 1,652,523 + +0.3 1,652,665 - HP15_1572 0.20 -0.8 1,652,665 - HP15_1572 0.20 -0.5 1,652,675 + HP15_1572 0.21 -0.8 1,652,675 + HP15_1572 0.21 +0.1 1,652,713 - HP15_1572 0.24 +0.2 1,652,808 + HP15_1572 0.32 +1.3 1,652,809 - HP15_1572 0.32 +0.3 1,652,844 + HP15_1572 0.35 -0.2 1,652,996 - HP15_1572 0.48 -0.2 1,653,121 + HP15_1572 0.59 +1.0 1,653,121 + HP15_1572 0.59 +1.0 1,653,231 + HP15_1572 0.69 +1.6 1,653,530 - -1.0 1,653,582 + -1.2 1,653,582 + +0.3 1,653,590 - -1.1 1,653,646 - -0.0 1,654,562 + HP15_1573 0.21 -0.7 1,654,562 + HP15_1573 0.21 +0.7 1,654,582 + HP15_1573 0.22 +1.1 1,654,593 + HP15_1573 0.23 -0.4 1,654,593 + HP15_1573 0.23 +0.9
Or see this region's nucleotide sequence