Strain Fitness in Marinobacter adhaerens HP15 around HP15_153

Experiment: DinoMM minimal media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_151 and HP15_152 are separated by 7 nucleotidesHP15_152 and HP15_153 are separated by 1 nucleotidesHP15_153 and HP15_154 are separated by 735 nucleotides HP15_151: HP15_151 - conserved hypothetical protein, membrane, at 151,796 to 152,884 _151 HP15_152: HP15_152 - conserved hypothetical protein, at 152,892 to 153,125 _152 HP15_153: HP15_153 - DSBA oxidoreductase, at 153,127 to 153,918 _153 HP15_154: HP15_154 - membrane protein, at 154,654 to 154,956 _154 Position (kb) 153 154Strain fitness (log2 ratio) -2 -1 0 1 2at 152.221 kb on + strand, within HP15_151at 152.225 kb on + strand, within HP15_151at 152.251 kb on + strand, within HP15_151at 152.259 kb on - strand, within HP15_151at 152.281 kb on - strand, within HP15_151at 152.311 kb on + strand, within HP15_151at 152.311 kb on + strand, within HP15_151at 152.319 kb on - strand, within HP15_151at 152.319 kb on - strand, within HP15_151at 152.319 kb on - strand, within HP15_151at 152.437 kb on + strand, within HP15_151at 152.452 kb on + strand, within HP15_151at 152.452 kb on + strand, within HP15_151at 152.570 kb on + strand, within HP15_151at 152.707 kb on + strand, within HP15_151at 152.724 kb on + strand, within HP15_151at 152.778 kb on - strandat 152.868 kb on - strandat 152.947 kb on - strand, within HP15_152at 152.957 kb on - strand, within HP15_152at 152.959 kb on + strand, within HP15_152at 152.986 kb on - strand, within HP15_152at 153.075 kb on - strand, within HP15_152at 153.152 kb on - strandat 153.173 kb on - strandat 153.199 kb on - strandat 153.248 kb on - strand, within HP15_153at 153.286 kb on + strand, within HP15_153at 153.316 kb on - strand, within HP15_153at 153.388 kb on - strand, within HP15_153at 153.464 kb on + strand, within HP15_153at 153.464 kb on + strand, within HP15_153at 153.469 kb on + strand, within HP15_153at 153.472 kb on - strand, within HP15_153at 153.472 kb on - strand, within HP15_153at 153.472 kb on - strand, within HP15_153at 153.512 kb on + strand, within HP15_153at 153.640 kb on + strand, within HP15_153at 153.640 kb on + strand, within HP15_153at 153.648 kb on - strand, within HP15_153at 153.724 kb on + strand, within HP15_153at 153.732 kb on - strand, within HP15_153at 153.732 kb on - strand, within HP15_153at 153.827 kb on + strand, within HP15_153at 153.942 kb on + strandat 153.950 kb on - strandat 153.950 kb on - strandat 153.970 kb on + strandat 154.131 kb on - strandat 154.187 kb on + strandat 154.201 kb on - strandat 154.233 kb on - strandat 154.252 kb on - strandat 154.325 kb on + strandat 154.420 kb on - strandat 154.443 kb on + strandat 154.461 kb on - strandat 154.461 kb on - strandat 154.473 kb on - strandat 154.494 kb on - strandat 154.552 kb on + strandat 154.588 kb on - strandat 154.613 kb on - strandat 154.617 kb on + strandat 154.617 kb on + strandat 154.625 kb on - strandat 154.738 kb on + strand, within HP15_154at 154.746 kb on - strand, within HP15_154at 154.761 kb on - strand, within HP15_154at 154.761 kb on - strand, within HP15_154at 154.777 kb on + strand, within HP15_154at 154.824 kb on + strand, within HP15_154at 154.832 kb on - strand, within HP15_154at 154.861 kb on + strand, within HP15_154at 154.861 kb on + strand, within HP15_154at 154.902 kb on + strand, within HP15_154at 154.910 kb on - strand, within HP15_154

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media
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152,221 + HP15_151 0.39 +0.2
152,225 + HP15_151 0.39 -0.2
152,251 + HP15_151 0.42 +0.6
152,259 - HP15_151 0.43 +1.2
152,281 - HP15_151 0.45 -2.1
152,311 + HP15_151 0.47 -0.3
152,311 + HP15_151 0.47 -0.1
152,319 - HP15_151 0.48 -1.3
152,319 - HP15_151 0.48 -0.8
152,319 - HP15_151 0.48 -0.5
152,437 + HP15_151 0.59 -0.8
152,452 + HP15_151 0.60 +0.2
152,452 + HP15_151 0.60 +0.6
152,570 + HP15_151 0.71 -0.2
152,707 + HP15_151 0.84 +0.7
152,724 + HP15_151 0.85 -1.0
152,778 - +1.0
152,868 - -0.4
152,947 - HP15_152 0.24 +1.5
152,957 - HP15_152 0.28 -0.4
152,959 + HP15_152 0.29 +0.7
152,986 - HP15_152 0.40 -0.8
153,075 - HP15_152 0.78 +1.1
153,152 - -0.3
153,173 - +1.0
153,199 - -0.6
153,248 - HP15_153 0.15 +2.1
153,286 + HP15_153 0.20 -0.4
153,316 - HP15_153 0.24 -0.8
153,388 - HP15_153 0.33 +1.5
153,464 + HP15_153 0.43 -2.0
153,464 + HP15_153 0.43 +0.7
153,469 + HP15_153 0.43 -0.2
153,472 - HP15_153 0.44 +0.9
153,472 - HP15_153 0.44 +1.6
153,472 - HP15_153 0.44 +0.0
153,512 + HP15_153 0.49 +1.5
153,640 + HP15_153 0.65 +1.6
153,640 + HP15_153 0.65 +1.5
153,648 - HP15_153 0.66 +0.1
153,724 + HP15_153 0.75 +0.9
153,732 - HP15_153 0.76 +0.7
153,732 - HP15_153 0.76 +0.9
153,827 + HP15_153 0.88 +1.3
153,942 + +0.2
153,950 - +0.3
153,950 - -0.6
153,970 + +0.1
154,131 - +2.1
154,187 + -0.0
154,201 - -0.2
154,233 - -0.0
154,252 - +0.6
154,325 + -0.7
154,420 - -0.3
154,443 + +0.1
154,461 - -1.2
154,461 - +0.3
154,473 - -0.4
154,494 - -0.5
154,552 + -0.7
154,588 - -0.3
154,613 - +0.9
154,617 + -1.6
154,617 + +0.5
154,625 - -0.5
154,738 + HP15_154 0.28 +1.3
154,746 - HP15_154 0.30 +0.1
154,761 - HP15_154 0.35 +0.1
154,761 - HP15_154 0.35 -1.1
154,777 + HP15_154 0.41 -0.4
154,824 + HP15_154 0.56 +1.1
154,832 - HP15_154 0.59 +1.3
154,861 + HP15_154 0.68 -0.2
154,861 + HP15_154 0.68 -0.2
154,902 + HP15_154 0.82 -1.5
154,910 - HP15_154 0.84 +0.0

Or see this region's nucleotide sequence