Strain Fitness in Marinobacter adhaerens HP15 around HP15_1435

Experiment: DinoMM minimal media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1433 and HP15_1434 are separated by 1 nucleotidesHP15_1434 and HP15_1435 are separated by 150 nucleotidesHP15_1435 and HP15_1436 are separated by 61 nucleotidesHP15_1436 and HP15_1437 are separated by 59 nucleotides HP15_1433: HP15_1433 - conserved hypothetical protein, secreted, at 1,512,390 to 1,512,887 _1433 HP15_1434: HP15_1434 - conserved hypothetical protein, at 1,512,889 to 1,513,209 _1434 HP15_1435: HP15_1435 - thioesterase superfamily protein, at 1,513,360 to 1,513,839 _1435 HP15_1436: HP15_1436 - protein containing DUF1330, at 1,513,901 to 1,514,191 _1436 HP15_1437: HP15_1437 - transcriptional regulator, LysR family protein, at 1,514,251 to 1,515,096 _1437 Position (kb) 1513 1514Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1512.513 kb on - strand, within HP15_1433at 1512.577 kb on + strand, within HP15_1433at 1512.577 kb on + strand, within HP15_1433at 1512.585 kb on - strand, within HP15_1433at 1512.585 kb on - strand, within HP15_1433at 1512.585 kb on - strand, within HP15_1433at 1512.662 kb on - strand, within HP15_1433at 1512.852 kb on + strandat 1512.968 kb on - strand, within HP15_1434at 1513.017 kb on - strand, within HP15_1434at 1513.024 kb on - strand, within HP15_1434at 1513.073 kb on + strand, within HP15_1434at 1513.095 kb on + strand, within HP15_1434at 1513.121 kb on - strand, within HP15_1434at 1513.141 kb on - strand, within HP15_1434at 1513.417 kb on - strand, within HP15_1435at 1513.486 kb on - strand, within HP15_1435at 1513.626 kb on - strand, within HP15_1435at 1513.683 kb on + strand, within HP15_1435at 1513.691 kb on + strand, within HP15_1435at 1513.691 kb on - strand, within HP15_1435at 1513.691 kb on - strand, within HP15_1435at 1513.734 kb on + strand, within HP15_1435at 1513.759 kb on + strand, within HP15_1435at 1513.801 kb on - strandat 1513.912 kb on + strandat 1513.983 kb on - strand, within HP15_1436at 1514.052 kb on - strand, within HP15_1436at 1514.089 kb on + strand, within HP15_1436at 1514.155 kb on + strand, within HP15_1436at 1514.163 kb on - strandat 1514.216 kb on - strandat 1514.257 kb on + strandat 1514.340 kb on + strand, within HP15_1437at 1514.497 kb on - strand, within HP15_1437at 1514.667 kb on + strand, within HP15_1437at 1514.756 kb on + strand, within HP15_1437at 1514.788 kb on + strand, within HP15_1437at 1514.813 kb on - strand, within HP15_1437

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media
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1,512,513 - HP15_1433 0.25 +0.7
1,512,577 + HP15_1433 0.38 +0.5
1,512,577 + HP15_1433 0.38 -0.6
1,512,585 - HP15_1433 0.39 -0.4
1,512,585 - HP15_1433 0.39 +0.4
1,512,585 - HP15_1433 0.39 -1.0
1,512,662 - HP15_1433 0.55 -1.4
1,512,852 + +1.0
1,512,968 - HP15_1434 0.25 -1.0
1,513,017 - HP15_1434 0.40 -0.6
1,513,024 - HP15_1434 0.42 +0.4
1,513,073 + HP15_1434 0.57 +0.1
1,513,095 + HP15_1434 0.64 -0.5
1,513,121 - HP15_1434 0.72 +0.9
1,513,141 - HP15_1434 0.79 +0.1
1,513,417 - HP15_1435 0.12 -0.3
1,513,486 - HP15_1435 0.26 +0.0
1,513,626 - HP15_1435 0.55 -0.4
1,513,683 + HP15_1435 0.67 -0.5
1,513,691 + HP15_1435 0.69 -0.4
1,513,691 - HP15_1435 0.69 -0.2
1,513,691 - HP15_1435 0.69 -0.5
1,513,734 + HP15_1435 0.78 -0.4
1,513,759 + HP15_1435 0.83 +0.8
1,513,801 - -0.4
1,513,912 + +2.7
1,513,983 - HP15_1436 0.28 +0.7
1,514,052 - HP15_1436 0.52 -0.2
1,514,089 + HP15_1436 0.65 -1.8
1,514,155 + HP15_1436 0.87 -1.0
1,514,163 - +1.3
1,514,216 - +3.0
1,514,257 + +0.4
1,514,340 + HP15_1437 0.11 -0.4
1,514,497 - HP15_1437 0.29 -0.4
1,514,667 + HP15_1437 0.49 -0.4
1,514,756 + HP15_1437 0.60 +0.9
1,514,788 + HP15_1437 0.63 -0.2
1,514,813 - HP15_1437 0.66 -0.4

Or see this region's nucleotide sequence