Strain Fitness in Marinobacter adhaerens HP15 around HP15_1425

Experiment: DinoMM minimal media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1423 and HP15_1424 are separated by 64 nucleotidesHP15_1424 and HP15_1425 are separated by 113 nucleotidesHP15_1425 and HP15_1426 are separated by 66 nucleotides HP15_1423: HP15_1423 - conserved hypothetical protein, secreted, at 1,506,176 to 1,506,568 _1423 HP15_1424: HP15_1424 - short-chain dehydrogenase/reductase SDR, at 1,506,633 to 1,507,334 _1424 HP15_1425: HP15_1425 - conserved hypothetical protein, secreted, at 1,507,448 to 1,507,876 _1425 HP15_1426: HP15_1426 - 6-aminohexanoate-dimer hydrolase, at 1,507,943 to 1,508,941 _1426 Position (kb) 1507 1508Strain fitness (log2 ratio) -1 0 1at 1506.473 kb on - strand, within HP15_1423at 1506.636 kb on + strandat 1506.702 kb on - strandat 1506.771 kb on - strand, within HP15_1424at 1506.827 kb on + strand, within HP15_1424at 1506.849 kb on + strand, within HP15_1424at 1507.114 kb on + strand, within HP15_1424at 1507.122 kb on - strand, within HP15_1424at 1507.122 kb on - strand, within HP15_1424at 1507.151 kb on + strand, within HP15_1424at 1507.151 kb on + strand, within HP15_1424at 1507.337 kb on + strandat 1507.419 kb on + strandat 1507.422 kb on - strandat 1507.438 kb on + strandat 1507.438 kb on + strandat 1507.446 kb on - strandat 1507.578 kb on + strand, within HP15_1425at 1507.614 kb on + strand, within HP15_1425at 1507.701 kb on - strand, within HP15_1425at 1507.845 kb on + strandat 1507.853 kb on - strandat 1508.029 kb on + strandat 1508.037 kb on - strandat 1508.037 kb on - strandat 1508.565 kb on - strand, within HP15_1426at 1508.721 kb on + strand, within HP15_1426at 1508.721 kb on + strand, within HP15_1426at 1508.826 kb on + strand, within HP15_1426

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media
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1,506,473 - HP15_1423 0.76 +1.4
1,506,636 + +1.1
1,506,702 - -0.5
1,506,771 - HP15_1424 0.20 +0.6
1,506,827 + HP15_1424 0.28 +1.2
1,506,849 + HP15_1424 0.31 +0.6
1,507,114 + HP15_1424 0.69 -1.5
1,507,122 - HP15_1424 0.70 -1.2
1,507,122 - HP15_1424 0.70 -0.6
1,507,151 + HP15_1424 0.74 +0.2
1,507,151 + HP15_1424 0.74 -0.8
1,507,337 + -0.2
1,507,419 + +0.4
1,507,422 - +1.2
1,507,438 + +0.3
1,507,438 + -0.3
1,507,446 - -0.3
1,507,578 + HP15_1425 0.30 +0.4
1,507,614 + HP15_1425 0.39 -1.2
1,507,701 - HP15_1425 0.59 +1.3
1,507,845 + +0.3
1,507,853 - +0.9
1,508,029 + +0.2
1,508,037 - +0.3
1,508,037 - -0.6
1,508,565 - HP15_1426 0.62 -0.3
1,508,721 + HP15_1426 0.78 -0.0
1,508,721 + HP15_1426 0.78 -0.8
1,508,826 + HP15_1426 0.88 +0.8

Or see this region's nucleotide sequence