Strain Fitness in Marinobacter adhaerens HP15 around HP15_1355

Experiment: DinoMM minimal media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1353 and HP15_1354 are separated by 35 nucleotidesHP15_1354 and HP15_1355 are separated by 15 nucleotidesHP15_1355 and HP15_1356 overlap by 4 nucleotidesHP15_1356 and HP15_1357 are separated by 40 nucleotides HP15_1353: HP15_1353 - UspA domain protein, at 1,422,906 to 1,423,694 _1353 HP15_1354: HP15_1354 - divalent heavy-metal cations transporter, at 1,423,730 to 1,424,449 _1354 HP15_1355: HP15_1355 - cell division protein FtsH, at 1,424,465 to 1,426,378 _1355 HP15_1356: HP15_1356 - conserved hypothetical protein, at 1,426,375 to 1,426,623 _1356 HP15_1357: HP15_1357 - gamma-glutamyltranspeptidase periplasmic precursor, at 1,426,664 to 1,428,427 _1357 Position (kb) 1424 1425 1426 1427Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1423.537 kb on + strand, within HP15_1353at 1423.645 kb on - strandat 1423.663 kb on + strandat 1423.742 kb on - strandat 1423.937 kb on - strand, within HP15_1354at 1423.946 kb on - strand, within HP15_1354at 1424.040 kb on - strand, within HP15_1354at 1424.106 kb on - strand, within HP15_1354at 1424.113 kb on + strand, within HP15_1354at 1424.128 kb on - strand, within HP15_1354at 1424.155 kb on + strand, within HP15_1354at 1424.204 kb on - strand, within HP15_1354at 1424.212 kb on + strand, within HP15_1354at 1424.240 kb on + strand, within HP15_1354at 1424.288 kb on + strand, within HP15_1354at 1424.367 kb on + strand, within HP15_1354at 1424.410 kb on + strandat 1424.415 kb on + strandat 1424.415 kb on + strandat 1424.423 kb on - strandat 1424.423 kb on - strandat 1424.423 kb on - strandat 1424.438 kb on - strandat 1424.544 kb on + strandat 1424.804 kb on - strand, within HP15_1355at 1424.822 kb on - strand, within HP15_1355at 1424.895 kb on + strand, within HP15_1355at 1424.929 kb on - strand, within HP15_1355at 1424.992 kb on + strand, within HP15_1355at 1424.992 kb on + strand, within HP15_1355at 1425.047 kb on - strand, within HP15_1355at 1425.049 kb on + strand, within HP15_1355at 1425.064 kb on - strand, within HP15_1355at 1425.085 kb on + strand, within HP15_1355at 1425.114 kb on - strand, within HP15_1355at 1425.214 kb on + strand, within HP15_1355at 1425.344 kb on - strand, within HP15_1355at 1425.349 kb on - strand, within HP15_1355at 1425.349 kb on - strand, within HP15_1355at 1425.354 kb on - strand, within HP15_1355at 1425.483 kb on - strand, within HP15_1355at 1425.483 kb on - strand, within HP15_1355at 1425.584 kb on - strand, within HP15_1355at 1425.667 kb on - strand, within HP15_1355at 1425.667 kb on - strand, within HP15_1355at 1425.672 kb on - strand, within HP15_1355at 1425.692 kb on + strand, within HP15_1355at 1425.836 kb on - strand, within HP15_1355at 1425.909 kb on + strand, within HP15_1355at 1425.975 kb on + strand, within HP15_1355at 1425.980 kb on + strand, within HP15_1355at 1425.993 kb on - strand, within HP15_1355at 1426.421 kb on + strand, within HP15_1356at 1426.469 kb on + strand, within HP15_1356at 1426.469 kb on + strand, within HP15_1356at 1426.477 kb on - strand, within HP15_1356at 1426.524 kb on + strand, within HP15_1356at 1426.532 kb on - strand, within HP15_1356at 1426.534 kb on + strand, within HP15_1356at 1426.534 kb on + strand, within HP15_1356at 1426.547 kb on - strand, within HP15_1356at 1427.089 kb on - strand, within HP15_1357at 1427.181 kb on + strand, within HP15_1357at 1427.189 kb on - strand, within HP15_1357at 1427.195 kb on - strand, within HP15_1357at 1427.208 kb on + strand, within HP15_1357at 1427.216 kb on - strand, within HP15_1357at 1427.236 kb on + strand, within HP15_1357at 1427.244 kb on - strand, within HP15_1357at 1427.287 kb on + strand, within HP15_1357at 1427.287 kb on + strand, within HP15_1357

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media
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1,423,537 + HP15_1353 0.80 -0.8
1,423,645 - -1.3
1,423,663 + -0.3
1,423,742 - +0.0
1,423,937 - HP15_1354 0.29 +0.0
1,423,946 - HP15_1354 0.30 -0.3
1,424,040 - HP15_1354 0.43 +0.1
1,424,106 - HP15_1354 0.52 -1.2
1,424,113 + HP15_1354 0.53 -0.2
1,424,128 - HP15_1354 0.55 +3.0
1,424,155 + HP15_1354 0.59 +0.2
1,424,204 - HP15_1354 0.66 +1.3
1,424,212 + HP15_1354 0.67 +1.7
1,424,240 + HP15_1354 0.71 +0.0
1,424,288 + HP15_1354 0.78 +1.2
1,424,367 + HP15_1354 0.88 -1.3
1,424,410 + +0.1
1,424,415 + -0.0
1,424,415 + -0.7
1,424,423 - -0.6
1,424,423 - -0.7
1,424,423 - +0.4
1,424,438 - +0.7
1,424,544 + +0.3
1,424,804 - HP15_1355 0.18 -0.6
1,424,822 - HP15_1355 0.19 -1.2
1,424,895 + HP15_1355 0.22 +2.9
1,424,929 - HP15_1355 0.24 -0.2
1,424,992 + HP15_1355 0.28 +0.3
1,424,992 + HP15_1355 0.28 +0.7
1,425,047 - HP15_1355 0.30 +0.5
1,425,049 + HP15_1355 0.31 +2.0
1,425,064 - HP15_1355 0.31 +1.1
1,425,085 + HP15_1355 0.32 +1.7
1,425,114 - HP15_1355 0.34 +2.0
1,425,214 + HP15_1355 0.39 -0.5
1,425,344 - HP15_1355 0.46 +1.5
1,425,349 - HP15_1355 0.46 +1.5
1,425,349 - HP15_1355 0.46 +1.0
1,425,354 - HP15_1355 0.46 +0.7
1,425,483 - HP15_1355 0.53 +1.0
1,425,483 - HP15_1355 0.53 +0.0
1,425,584 - HP15_1355 0.58 -0.7
1,425,667 - HP15_1355 0.63 +0.9
1,425,667 - HP15_1355 0.63 +0.7
1,425,672 - HP15_1355 0.63 -1.0
1,425,692 + HP15_1355 0.64 +1.1
1,425,836 - HP15_1355 0.72 +0.8
1,425,909 + HP15_1355 0.75 -0.4
1,425,975 + HP15_1355 0.79 +0.9
1,425,980 + HP15_1355 0.79 -0.2
1,425,993 - HP15_1355 0.80 -0.7
1,426,421 + HP15_1356 0.18 -1.0
1,426,469 + HP15_1356 0.38 +0.1
1,426,469 + HP15_1356 0.38 -1.7
1,426,477 - HP15_1356 0.41 -0.3
1,426,524 + HP15_1356 0.60 -1.4
1,426,532 - HP15_1356 0.63 +1.7
1,426,534 + HP15_1356 0.64 +1.5
1,426,534 + HP15_1356 0.64 -2.2
1,426,547 - HP15_1356 0.69 +0.0
1,427,089 - HP15_1357 0.24 +0.8
1,427,181 + HP15_1357 0.29 +0.9
1,427,189 - HP15_1357 0.30 -0.3
1,427,195 - HP15_1357 0.30 -0.3
1,427,208 + HP15_1357 0.31 +0.7
1,427,216 - HP15_1357 0.31 +0.3
1,427,236 + HP15_1357 0.32 -0.9
1,427,244 - HP15_1357 0.33 -0.1
1,427,287 + HP15_1357 0.35 -0.3
1,427,287 + HP15_1357 0.35 +0.9

Or see this region's nucleotide sequence