Experiment: DinoMM minimal media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1353 and HP15_1354 are separated by 35 nucleotides HP15_1354 and HP15_1355 are separated by 15 nucleotides HP15_1355 and HP15_1356 overlap by 4 nucleotides HP15_1356 and HP15_1357 are separated by 40 nucleotides
HP15_1353: HP15_1353 - UspA domain protein, at 1,422,906 to 1,423,694
_1353
HP15_1354: HP15_1354 - divalent heavy-metal cations transporter, at 1,423,730 to 1,424,449
_1354
HP15_1355: HP15_1355 - cell division protein FtsH, at 1,424,465 to 1,426,378
_1355
HP15_1356: HP15_1356 - conserved hypothetical protein, at 1,426,375 to 1,426,623
_1356
HP15_1357: HP15_1357 - gamma-glutamyltranspeptidase periplasmic precursor, at 1,426,664 to 1,428,427
_1357
Position (kb)
1424
1425
1426
1427 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1423.537 kb on + strand, within HP15_1353 at 1423.645 kb on - strand at 1423.663 kb on + strand at 1423.742 kb on - strand at 1423.937 kb on - strand, within HP15_1354 at 1423.946 kb on - strand, within HP15_1354 at 1424.040 kb on - strand, within HP15_1354 at 1424.106 kb on - strand, within HP15_1354 at 1424.113 kb on + strand, within HP15_1354 at 1424.128 kb on - strand, within HP15_1354 at 1424.155 kb on + strand, within HP15_1354 at 1424.204 kb on - strand, within HP15_1354 at 1424.212 kb on + strand, within HP15_1354 at 1424.240 kb on + strand, within HP15_1354 at 1424.288 kb on + strand, within HP15_1354 at 1424.367 kb on + strand, within HP15_1354 at 1424.410 kb on + strand at 1424.415 kb on + strand at 1424.415 kb on + strand at 1424.423 kb on - strand at 1424.423 kb on - strand at 1424.423 kb on - strand at 1424.438 kb on - strand at 1424.544 kb on + strand at 1424.804 kb on - strand, within HP15_1355 at 1424.822 kb on - strand, within HP15_1355 at 1424.895 kb on + strand, within HP15_1355 at 1424.929 kb on - strand, within HP15_1355 at 1424.992 kb on + strand, within HP15_1355 at 1424.992 kb on + strand, within HP15_1355 at 1425.047 kb on - strand, within HP15_1355 at 1425.049 kb on + strand, within HP15_1355 at 1425.064 kb on - strand, within HP15_1355 at 1425.085 kb on + strand, within HP15_1355 at 1425.114 kb on - strand, within HP15_1355 at 1425.214 kb on + strand, within HP15_1355 at 1425.344 kb on - strand, within HP15_1355 at 1425.349 kb on - strand, within HP15_1355 at 1425.349 kb on - strand, within HP15_1355 at 1425.354 kb on - strand, within HP15_1355 at 1425.483 kb on - strand, within HP15_1355 at 1425.483 kb on - strand, within HP15_1355 at 1425.584 kb on - strand, within HP15_1355 at 1425.667 kb on - strand, within HP15_1355 at 1425.667 kb on - strand, within HP15_1355 at 1425.672 kb on - strand, within HP15_1355 at 1425.692 kb on + strand, within HP15_1355 at 1425.836 kb on - strand, within HP15_1355 at 1425.909 kb on + strand, within HP15_1355 at 1425.975 kb on + strand, within HP15_1355 at 1425.980 kb on + strand, within HP15_1355 at 1425.993 kb on - strand, within HP15_1355 at 1426.421 kb on + strand, within HP15_1356 at 1426.469 kb on + strand, within HP15_1356 at 1426.469 kb on + strand, within HP15_1356 at 1426.477 kb on - strand, within HP15_1356 at 1426.524 kb on + strand, within HP15_1356 at 1426.532 kb on - strand, within HP15_1356 at 1426.534 kb on + strand, within HP15_1356 at 1426.534 kb on + strand, within HP15_1356 at 1426.547 kb on - strand, within HP15_1356 at 1427.089 kb on - strand, within HP15_1357 at 1427.181 kb on + strand, within HP15_1357 at 1427.189 kb on - strand, within HP15_1357 at 1427.195 kb on - strand, within HP15_1357 at 1427.208 kb on + strand, within HP15_1357 at 1427.216 kb on - strand, within HP15_1357 at 1427.236 kb on + strand, within HP15_1357 at 1427.244 kb on - strand, within HP15_1357 at 1427.287 kb on + strand, within HP15_1357 at 1427.287 kb on + strand, within HP15_1357
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media remove 1,423,537 + HP15_1353 0.80 -0.8 1,423,645 - -1.3 1,423,663 + -0.3 1,423,742 - +0.0 1,423,937 - HP15_1354 0.29 +0.0 1,423,946 - HP15_1354 0.30 -0.3 1,424,040 - HP15_1354 0.43 +0.1 1,424,106 - HP15_1354 0.52 -1.2 1,424,113 + HP15_1354 0.53 -0.2 1,424,128 - HP15_1354 0.55 +3.0 1,424,155 + HP15_1354 0.59 +0.2 1,424,204 - HP15_1354 0.66 +1.3 1,424,212 + HP15_1354 0.67 +1.7 1,424,240 + HP15_1354 0.71 +0.0 1,424,288 + HP15_1354 0.78 +1.2 1,424,367 + HP15_1354 0.88 -1.3 1,424,410 + +0.1 1,424,415 + -0.0 1,424,415 + -0.7 1,424,423 - -0.6 1,424,423 - -0.7 1,424,423 - +0.4 1,424,438 - +0.7 1,424,544 + +0.3 1,424,804 - HP15_1355 0.18 -0.6 1,424,822 - HP15_1355 0.19 -1.2 1,424,895 + HP15_1355 0.22 +2.9 1,424,929 - HP15_1355 0.24 -0.2 1,424,992 + HP15_1355 0.28 +0.3 1,424,992 + HP15_1355 0.28 +0.7 1,425,047 - HP15_1355 0.30 +0.5 1,425,049 + HP15_1355 0.31 +2.0 1,425,064 - HP15_1355 0.31 +1.1 1,425,085 + HP15_1355 0.32 +1.7 1,425,114 - HP15_1355 0.34 +2.0 1,425,214 + HP15_1355 0.39 -0.5 1,425,344 - HP15_1355 0.46 +1.5 1,425,349 - HP15_1355 0.46 +1.5 1,425,349 - HP15_1355 0.46 +1.0 1,425,354 - HP15_1355 0.46 +0.7 1,425,483 - HP15_1355 0.53 +1.0 1,425,483 - HP15_1355 0.53 +0.0 1,425,584 - HP15_1355 0.58 -0.7 1,425,667 - HP15_1355 0.63 +0.9 1,425,667 - HP15_1355 0.63 +0.7 1,425,672 - HP15_1355 0.63 -1.0 1,425,692 + HP15_1355 0.64 +1.1 1,425,836 - HP15_1355 0.72 +0.8 1,425,909 + HP15_1355 0.75 -0.4 1,425,975 + HP15_1355 0.79 +0.9 1,425,980 + HP15_1355 0.79 -0.2 1,425,993 - HP15_1355 0.80 -0.7 1,426,421 + HP15_1356 0.18 -1.0 1,426,469 + HP15_1356 0.38 +0.1 1,426,469 + HP15_1356 0.38 -1.7 1,426,477 - HP15_1356 0.41 -0.3 1,426,524 + HP15_1356 0.60 -1.4 1,426,532 - HP15_1356 0.63 +1.7 1,426,534 + HP15_1356 0.64 +1.5 1,426,534 + HP15_1356 0.64 -2.2 1,426,547 - HP15_1356 0.69 +0.0 1,427,089 - HP15_1357 0.24 +0.8 1,427,181 + HP15_1357 0.29 +0.9 1,427,189 - HP15_1357 0.30 -0.3 1,427,195 - HP15_1357 0.30 -0.3 1,427,208 + HP15_1357 0.31 +0.7 1,427,216 - HP15_1357 0.31 +0.3 1,427,236 + HP15_1357 0.32 -0.9 1,427,244 - HP15_1357 0.33 -0.1 1,427,287 + HP15_1357 0.35 -0.3 1,427,287 + HP15_1357 0.35 +0.9
Or see this region's nucleotide sequence