Experiment: DinoMM minimal media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1322 and HP15_1323 are separated by 55 nucleotides HP15_1323 and HP15_1324 are separated by 21 nucleotides HP15_1324 and HP15_1325 are separated by 72 nucleotides
HP15_1322: HP15_1322 - conserved hypothetical protein, at 1,386,252 to 1,387,145
_1322
HP15_1323: HP15_1323 - hypothetical protein, at 1,387,201 to 1,387,356
_1323
HP15_1324: HP15_1324 - metallo-beta-lactamase family protein, at 1,387,378 to 1,388,553
_1324
HP15_1325: HP15_1325 - methyl-accepting chemotaxis sensory transducer, at 1,388,626 to 1,390,566
_1325
Position (kb)
1387
1388
1389 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1386.434 kb on + strand, within HP15_1322 at 1386.457 kb on - strand, within HP15_1322 at 1386.477 kb on - strand, within HP15_1322 at 1386.500 kb on + strand, within HP15_1322 at 1386.532 kb on - strand, within HP15_1322 at 1386.562 kb on - strand, within HP15_1322 at 1386.574 kb on + strand, within HP15_1322 at 1386.663 kb on - strand, within HP15_1322 at 1386.740 kb on + strand, within HP15_1322 at 1386.761 kb on - strand, within HP15_1322 at 1386.780 kb on - strand, within HP15_1322 at 1386.802 kb on + strand, within HP15_1322 at 1386.810 kb on - strand, within HP15_1322 at 1386.946 kb on + strand, within HP15_1322 at 1387.221 kb on - strand, within HP15_1323 at 1387.258 kb on - strand, within HP15_1323 at 1387.265 kb on + strand, within HP15_1323 at 1387.539 kb on + strand, within HP15_1324 at 1387.550 kb on + strand, within HP15_1324 at 1387.552 kb on - strand, within HP15_1324 at 1387.615 kb on - strand, within HP15_1324 at 1387.756 kb on - strand, within HP15_1324 at 1387.917 kb on - strand, within HP15_1324 at 1387.958 kb on + strand, within HP15_1324 at 1387.995 kb on - strand, within HP15_1324 at 1388.077 kb on - strand, within HP15_1324 at 1388.077 kb on - strand, within HP15_1324 at 1388.079 kb on + strand, within HP15_1324 at 1388.122 kb on - strand, within HP15_1324 at 1388.160 kb on + strand, within HP15_1324 at 1388.417 kb on - strand, within HP15_1324 at 1388.515 kb on - strand at 1388.517 kb on + strand at 1388.530 kb on - strand at 1388.827 kb on - strand, within HP15_1325 at 1388.888 kb on - strand, within HP15_1325 at 1388.888 kb on - strand, within HP15_1325 at 1388.888 kb on - strand, within HP15_1325 at 1388.888 kb on - strand, within HP15_1325 at 1388.952 kb on - strand, within HP15_1325 at 1389.000 kb on + strand, within HP15_1325 at 1389.000 kb on + strand, within HP15_1325 at 1389.066 kb on + strand, within HP15_1325 at 1389.069 kb on + strand, within HP15_1325 at 1389.132 kb on - strand, within HP15_1325 at 1389.165 kb on + strand, within HP15_1325 at 1389.359 kb on - strand, within HP15_1325 at 1389.415 kb on - strand, within HP15_1325 at 1389.503 kb on + strand, within HP15_1325 at 1389.511 kb on - strand, within HP15_1325
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media remove 1,386,434 + HP15_1322 0.20 -1.2 1,386,457 - HP15_1322 0.23 +1.0 1,386,477 - HP15_1322 0.25 +1.2 1,386,500 + HP15_1322 0.28 -1.1 1,386,532 - HP15_1322 0.31 -1.2 1,386,562 - HP15_1322 0.35 -0.7 1,386,574 + HP15_1322 0.36 -0.1 1,386,663 - HP15_1322 0.46 +0.6 1,386,740 + HP15_1322 0.55 -1.4 1,386,761 - HP15_1322 0.57 -1.0 1,386,780 - HP15_1322 0.59 -0.4 1,386,802 + HP15_1322 0.62 +0.6 1,386,810 - HP15_1322 0.62 +0.3 1,386,946 + HP15_1322 0.78 -0.7 1,387,221 - HP15_1323 0.13 +0.5 1,387,258 - HP15_1323 0.37 -0.6 1,387,265 + HP15_1323 0.41 +0.6 1,387,539 + HP15_1324 0.14 -0.3 1,387,550 + HP15_1324 0.15 +0.7 1,387,552 - HP15_1324 0.15 +1.0 1,387,615 - HP15_1324 0.20 +0.9 1,387,756 - HP15_1324 0.32 -0.8 1,387,917 - HP15_1324 0.46 +0.2 1,387,958 + HP15_1324 0.49 +0.6 1,387,995 - HP15_1324 0.52 +1.9 1,388,077 - HP15_1324 0.59 +0.6 1,388,077 - HP15_1324 0.59 +0.2 1,388,079 + HP15_1324 0.60 -0.1 1,388,122 - HP15_1324 0.63 -0.3 1,388,160 + HP15_1324 0.66 +1.7 1,388,417 - HP15_1324 0.88 +1.0 1,388,515 - -0.4 1,388,517 + +1.6 1,388,530 - -0.1 1,388,827 - HP15_1325 0.10 -1.2 1,388,888 - HP15_1325 0.13 +0.5 1,388,888 - HP15_1325 0.13 +1.3 1,388,888 - HP15_1325 0.13 -0.5 1,388,888 - HP15_1325 0.13 +0.8 1,388,952 - HP15_1325 0.17 +0.7 1,389,000 + HP15_1325 0.19 +1.4 1,389,000 + HP15_1325 0.19 -2.1 1,389,066 + HP15_1325 0.23 +0.9 1,389,069 + HP15_1325 0.23 +0.4 1,389,132 - HP15_1325 0.26 -0.4 1,389,165 + HP15_1325 0.28 -0.3 1,389,359 - HP15_1325 0.38 +0.5 1,389,415 - HP15_1325 0.41 -1.0 1,389,503 + HP15_1325 0.45 +1.0 1,389,511 - HP15_1325 0.46 -1.0
Or see this region's nucleotide sequence