Experiment: DinoMM minimal media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1321 and HP15_tRNA22 are separated by 126 nucleotides HP15_tRNA22 and HP15_tRNA23 are separated by 64 nucleotides HP15_tRNA23 and HP15_tRNA24 are separated by 25 nucleotides HP15_tRNA24 and HP15_1322 are separated by 453 nucleotides HP15_1322 and HP15_1323 are separated by 55 nucleotides HP15_1323 and HP15_1324 are separated by 21 nucleotides
HP15_1321: HP15_1321 - carbon storage regulator, at 1,385,163 to 1,385,339
_1321
HP15_tRNA22: HP15_tRNA22 - tRNA-Ser, at 1,385,466 to 1,385,555
_tRNA22
HP15_tRNA23: HP15_tRNA23 - tRNA-Arg, at 1,385,620 to 1,385,696
_tRNA23
HP15_tRNA24: HP15_tRNA24 - tRNA-Arg, at 1,385,722 to 1,385,798
_tRNA24
HP15_1322: HP15_1322 - conserved hypothetical protein, at 1,386,252 to 1,387,145
_1322
HP15_1323: HP15_1323 - hypothetical protein, at 1,387,201 to 1,387,356
_1323
HP15_1324: HP15_1324 - metallo-beta-lactamase family protein, at 1,387,378 to 1,388,553
_1324
Position (kb)
1386
1387
1388 Strain fitness (log2 ratio)
-1
0
1
2 at 1385.308 kb on + strand, within HP15_1321 at 1385.850 kb on + strand at 1385.908 kb on + strand at 1385.919 kb on + strand at 1385.948 kb on - strand at 1386.046 kb on + strand at 1386.046 kb on + strand at 1386.046 kb on + strand at 1386.054 kb on - strand at 1386.056 kb on + strand at 1386.064 kb on - strand at 1386.201 kb on + strand at 1386.203 kb on + strand at 1386.267 kb on - strand at 1386.372 kb on + strand, within HP15_1322 at 1386.372 kb on + strand, within HP15_1322 at 1386.434 kb on + strand, within HP15_1322 at 1386.457 kb on - strand, within HP15_1322 at 1386.477 kb on - strand, within HP15_1322 at 1386.500 kb on + strand, within HP15_1322 at 1386.532 kb on - strand, within HP15_1322 at 1386.562 kb on - strand, within HP15_1322 at 1386.574 kb on + strand, within HP15_1322 at 1386.663 kb on - strand, within HP15_1322 at 1386.740 kb on + strand, within HP15_1322 at 1386.761 kb on - strand, within HP15_1322 at 1386.780 kb on - strand, within HP15_1322 at 1386.802 kb on + strand, within HP15_1322 at 1386.810 kb on - strand, within HP15_1322 at 1386.946 kb on + strand, within HP15_1322 at 1387.221 kb on - strand, within HP15_1323 at 1387.258 kb on - strand, within HP15_1323 at 1387.265 kb on + strand, within HP15_1323 at 1387.539 kb on + strand, within HP15_1324 at 1387.550 kb on + strand, within HP15_1324 at 1387.552 kb on - strand, within HP15_1324 at 1387.615 kb on - strand, within HP15_1324 at 1387.756 kb on - strand, within HP15_1324 at 1387.917 kb on - strand, within HP15_1324 at 1387.958 kb on + strand, within HP15_1324 at 1387.995 kb on - strand, within HP15_1324 at 1388.077 kb on - strand, within HP15_1324 at 1388.077 kb on - strand, within HP15_1324 at 1388.079 kb on + strand, within HP15_1324 at 1388.122 kb on - strand, within HP15_1324
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media remove 1,385,308 + HP15_1321 0.82 +0.2 1,385,850 + -0.2 1,385,908 + -0.7 1,385,919 + +0.4 1,385,948 - -0.8 1,386,046 + -0.8 1,386,046 + +1.1 1,386,046 + +1.7 1,386,054 - -0.1 1,386,056 + +1.5 1,386,064 - +0.3 1,386,201 + -1.0 1,386,203 + +0.0 1,386,267 - +1.5 1,386,372 + HP15_1322 0.13 +0.8 1,386,372 + HP15_1322 0.13 +0.0 1,386,434 + HP15_1322 0.20 -1.2 1,386,457 - HP15_1322 0.23 +1.0 1,386,477 - HP15_1322 0.25 +1.2 1,386,500 + HP15_1322 0.28 -1.1 1,386,532 - HP15_1322 0.31 -1.2 1,386,562 - HP15_1322 0.35 -0.7 1,386,574 + HP15_1322 0.36 -0.1 1,386,663 - HP15_1322 0.46 +0.6 1,386,740 + HP15_1322 0.55 -1.4 1,386,761 - HP15_1322 0.57 -1.0 1,386,780 - HP15_1322 0.59 -0.4 1,386,802 + HP15_1322 0.62 +0.6 1,386,810 - HP15_1322 0.62 +0.3 1,386,946 + HP15_1322 0.78 -0.7 1,387,221 - HP15_1323 0.13 +0.5 1,387,258 - HP15_1323 0.37 -0.6 1,387,265 + HP15_1323 0.41 +0.6 1,387,539 + HP15_1324 0.14 -0.3 1,387,550 + HP15_1324 0.15 +0.7 1,387,552 - HP15_1324 0.15 +1.0 1,387,615 - HP15_1324 0.20 +0.9 1,387,756 - HP15_1324 0.32 -0.8 1,387,917 - HP15_1324 0.46 +0.2 1,387,958 + HP15_1324 0.49 +0.6 1,387,995 - HP15_1324 0.52 +1.9 1,388,077 - HP15_1324 0.59 +0.6 1,388,077 - HP15_1324 0.59 +0.2 1,388,079 + HP15_1324 0.60 -0.1 1,388,122 - HP15_1324 0.63 -0.3
Or see this region's nucleotide sequence