Experiment: DinoMM minimal media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1155 and HP15_1156 overlap by 29 nucleotides HP15_1156 and HP15_1157 are separated by 43 nucleotides HP15_1157 and HP15_1158 are separated by 157 nucleotides
HP15_1155: HP15_1155 - conserved hypothetical protein, at 1,188,639 to 1,190,063
_1155
HP15_1156: HP15_1156 - conserved hypothetical protein, at 1,190,035 to 1,190,409
_1156
HP15_1157: HP15_1157 - cold-shock DNA-binding domain protein, at 1,190,453 to 1,191,052
_1157
HP15_1158: HP15_1158 - SlyX protein, at 1,191,210 to 1,191,428
_1158
Position (kb)
1190
1191 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1189.114 kb on + strand, within HP15_1155 at 1189.204 kb on - strand, within HP15_1155 at 1189.257 kb on + strand, within HP15_1155 at 1189.299 kb on + strand, within HP15_1155 at 1189.327 kb on + strand, within HP15_1155 at 1189.367 kb on + strand, within HP15_1155 at 1189.388 kb on - strand, within HP15_1155 at 1189.458 kb on - strand, within HP15_1155 at 1189.476 kb on - strand, within HP15_1155 at 1189.476 kb on - strand, within HP15_1155 at 1189.746 kb on + strand, within HP15_1155 at 1189.754 kb on - strand, within HP15_1155 at 1189.776 kb on - strand, within HP15_1155 at 1189.866 kb on - strand, within HP15_1155 at 1190.271 kb on - strand, within HP15_1156 at 1190.271 kb on - strand, within HP15_1156 at 1190.318 kb on + strand, within HP15_1156 at 1190.376 kb on + strand at 1190.530 kb on - strand, within HP15_1157 at 1190.578 kb on - strand, within HP15_1157 at 1190.745 kb on - strand, within HP15_1157 at 1190.815 kb on + strand, within HP15_1157 at 1190.815 kb on + strand, within HP15_1157 at 1190.822 kb on + strand, within HP15_1157 at 1190.869 kb on + strand, within HP15_1157 at 1190.932 kb on - strand, within HP15_1157 at 1191.124 kb on - strand at 1191.144 kb on - strand at 1191.187 kb on + strand at 1191.195 kb on - strand at 1191.288 kb on - strand, within HP15_1158 at 1191.396 kb on + strand, within HP15_1158 at 1191.409 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media remove 1,189,114 + HP15_1155 0.33 +1.5 1,189,204 - HP15_1155 0.40 -1.2 1,189,257 + HP15_1155 0.43 -1.3 1,189,299 + HP15_1155 0.46 +0.2 1,189,327 + HP15_1155 0.48 -1.5 1,189,367 + HP15_1155 0.51 -0.7 1,189,388 - HP15_1155 0.53 -0.6 1,189,458 - HP15_1155 0.57 -1.8 1,189,476 - HP15_1155 0.59 +0.4 1,189,476 - HP15_1155 0.59 +0.2 1,189,746 + HP15_1155 0.78 +0.2 1,189,754 - HP15_1155 0.78 +1.2 1,189,776 - HP15_1155 0.80 +0.3 1,189,866 - HP15_1155 0.86 -0.7 1,190,271 - HP15_1156 0.63 +0.8 1,190,271 - HP15_1156 0.63 -2.4 1,190,318 + HP15_1156 0.75 -0.9 1,190,376 + -0.3 1,190,530 - HP15_1157 0.13 +0.0 1,190,578 - HP15_1157 0.21 +1.0 1,190,745 - HP15_1157 0.49 -0.4 1,190,815 + HP15_1157 0.60 -2.1 1,190,815 + HP15_1157 0.60 -0.4 1,190,822 + HP15_1157 0.61 +2.0 1,190,869 + HP15_1157 0.69 -0.0 1,190,932 - HP15_1157 0.80 +0.7 1,191,124 - +0.6 1,191,144 - -0.7 1,191,187 + +0.2 1,191,195 - -0.6 1,191,288 - HP15_1158 0.36 +0.9 1,191,396 + HP15_1158 0.85 -1.0 1,191,409 - -0.5
Or see this region's nucleotide sequence