Strain Fitness in Marinobacter adhaerens HP15 around HP15_1156

Experiment: DinoMM minimal media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1155 and HP15_1156 overlap by 29 nucleotidesHP15_1156 and HP15_1157 are separated by 43 nucleotidesHP15_1157 and HP15_1158 are separated by 157 nucleotides HP15_1155: HP15_1155 - conserved hypothetical protein, at 1,188,639 to 1,190,063 _1155 HP15_1156: HP15_1156 - conserved hypothetical protein, at 1,190,035 to 1,190,409 _1156 HP15_1157: HP15_1157 - cold-shock DNA-binding domain protein, at 1,190,453 to 1,191,052 _1157 HP15_1158: HP15_1158 - SlyX protein, at 1,191,210 to 1,191,428 _1158 Position (kb) 1190 1191Strain fitness (log2 ratio) -2 -1 0 1 2at 1189.114 kb on + strand, within HP15_1155at 1189.204 kb on - strand, within HP15_1155at 1189.257 kb on + strand, within HP15_1155at 1189.299 kb on + strand, within HP15_1155at 1189.327 kb on + strand, within HP15_1155at 1189.367 kb on + strand, within HP15_1155at 1189.388 kb on - strand, within HP15_1155at 1189.458 kb on - strand, within HP15_1155at 1189.476 kb on - strand, within HP15_1155at 1189.476 kb on - strand, within HP15_1155at 1189.746 kb on + strand, within HP15_1155at 1189.754 kb on - strand, within HP15_1155at 1189.776 kb on - strand, within HP15_1155at 1189.866 kb on - strand, within HP15_1155at 1190.271 kb on - strand, within HP15_1156at 1190.271 kb on - strand, within HP15_1156at 1190.318 kb on + strand, within HP15_1156at 1190.376 kb on + strandat 1190.530 kb on - strand, within HP15_1157at 1190.578 kb on - strand, within HP15_1157at 1190.745 kb on - strand, within HP15_1157at 1190.815 kb on + strand, within HP15_1157at 1190.815 kb on + strand, within HP15_1157at 1190.822 kb on + strand, within HP15_1157at 1190.869 kb on + strand, within HP15_1157at 1190.932 kb on - strand, within HP15_1157at 1191.124 kb on - strandat 1191.144 kb on - strandat 1191.187 kb on + strandat 1191.195 kb on - strandat 1191.288 kb on - strand, within HP15_1158at 1191.396 kb on + strand, within HP15_1158at 1191.409 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media
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1,189,114 + HP15_1155 0.33 +1.5
1,189,204 - HP15_1155 0.40 -1.2
1,189,257 + HP15_1155 0.43 -1.3
1,189,299 + HP15_1155 0.46 +0.2
1,189,327 + HP15_1155 0.48 -1.5
1,189,367 + HP15_1155 0.51 -0.7
1,189,388 - HP15_1155 0.53 -0.6
1,189,458 - HP15_1155 0.57 -1.8
1,189,476 - HP15_1155 0.59 +0.4
1,189,476 - HP15_1155 0.59 +0.2
1,189,746 + HP15_1155 0.78 +0.2
1,189,754 - HP15_1155 0.78 +1.2
1,189,776 - HP15_1155 0.80 +0.3
1,189,866 - HP15_1155 0.86 -0.7
1,190,271 - HP15_1156 0.63 +0.8
1,190,271 - HP15_1156 0.63 -2.4
1,190,318 + HP15_1156 0.75 -0.9
1,190,376 + -0.3
1,190,530 - HP15_1157 0.13 +0.0
1,190,578 - HP15_1157 0.21 +1.0
1,190,745 - HP15_1157 0.49 -0.4
1,190,815 + HP15_1157 0.60 -2.1
1,190,815 + HP15_1157 0.60 -0.4
1,190,822 + HP15_1157 0.61 +2.0
1,190,869 + HP15_1157 0.69 -0.0
1,190,932 - HP15_1157 0.80 +0.7
1,191,124 - +0.6
1,191,144 - -0.7
1,191,187 + +0.2
1,191,195 - -0.6
1,191,288 - HP15_1158 0.36 +0.9
1,191,396 + HP15_1158 0.85 -1.0
1,191,409 - -0.5

Or see this region's nucleotide sequence