Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0041

Experiment: Formate/Acetate-Sulfite (60/30-60 mM) + 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0040 and exeA are separated by 11 nucleotidesexeA and DVUA0042 are separated by 176 nucleotides DVUA0040: DVUA0040 - polysaccharide biosynthesis protein, putative (TIGR), at 47,964 to 49,082 DVUA0040 DVUA0041: exeA - conserved domain protein (TIGR), at 49,094 to 50,413 exeA DVUA0042: DVUA0042 - lipoprotein, putative (TIGR), at 50,590 to 51,912 DVUA0042 Position (kb) 49 50 51Strain fitness (log2 ratio) -1 0 1at 48.100 kb on + strand, within DVUA0040at 48.100 kb on + strand, within DVUA0040at 48.100 kb on + strand, within DVUA0040at 48.100 kb on + strand, within DVUA0040at 48.108 kb on - strand, within DVUA0040at 48.108 kb on - strand, within DVUA0040at 48.108 kb on - strand, within DVUA0040at 48.108 kb on - strand, within DVUA0040at 48.108 kb on - strand, within DVUA0040at 48.108 kb on - strand, within DVUA0040at 48.158 kb on - strand, within DVUA0040at 48.320 kb on + strand, within DVUA0040at 48.320 kb on + strand, within DVUA0040at 48.328 kb on - strand, within DVUA0040at 48.356 kb on + strand, within DVUA0040at 48.382 kb on - strand, within DVUA0040at 48.392 kb on - strand, within DVUA0040at 48.433 kb on - strand, within DVUA0040at 48.468 kb on + strand, within DVUA0040at 48.585 kb on - strand, within DVUA0040at 48.642 kb on - strand, within DVUA0040at 48.696 kb on - strand, within DVUA0040at 48.729 kb on + strand, within DVUA0040at 48.792 kb on - strand, within DVUA0040at 48.794 kb on + strand, within DVUA0040at 48.944 kb on - strand, within DVUA0040at 48.960 kb on - strand, within DVUA0040at 48.979 kb on - strandat 49.063 kb on + strandat 49.104 kb on - strandat 49.121 kb on - strandat 49.121 kb on - strandat 49.198 kb on + strandat 49.216 kb on - strandat 49.229 kb on + strand, within exeAat 49.232 kb on - strand, within exeAat 49.280 kb on - strand, within exeAat 49.290 kb on - strand, within exeAat 49.311 kb on + strand, within exeAat 49.428 kb on - strand, within exeAat 49.464 kb on - strand, within exeAat 49.481 kb on - strand, within exeAat 49.481 kb on - strand, within exeAat 49.484 kb on + strand, within exeAat 49.505 kb on - strand, within exeAat 49.505 kb on - strand, within exeAat 49.528 kb on + strand, within exeAat 49.591 kb on + strand, within exeAat 49.638 kb on + strand, within exeAat 49.656 kb on - strand, within exeAat 49.668 kb on + strand, within exeAat 49.668 kb on + strand, within exeAat 49.676 kb on - strand, within exeAat 49.727 kb on + strand, within exeAat 49.732 kb on + strand, within exeAat 49.735 kb on - strand, within exeAat 49.735 kb on - strand, within exeAat 49.737 kb on + strand, within exeAat 49.737 kb on + strand, within exeAat 49.765 kb on - strand, within exeAat 49.767 kb on + strand, within exeAat 49.790 kb on - strand, within exeAat 49.851 kb on - strand, within exeAat 49.874 kb on + strand, within exeAat 49.874 kb on - strand, within exeAat 49.903 kb on + strand, within exeAat 50.072 kb on + strand, within exeAat 50.166 kb on + strand, within exeAat 50.244 kb on - strand, within exeAat 50.292 kb on + strandat 50.330 kb on - strandat 50.334 kb on - strandat 50.353 kb on - strandat 50.355 kb on - strandat 50.522 kb on + strandat 50.609 kb on - strandat 50.619 kb on - strandat 50.641 kb on + strandat 50.667 kb on - strandat 50.684 kb on - strandat 50.784 kb on + strand, within DVUA0042at 50.884 kb on + strand, within DVUA0042at 50.902 kb on - strand, within DVUA0042at 50.902 kb on - strand, within DVUA0042at 50.921 kb on - strand, within DVUA0042at 50.943 kb on - strand, within DVUA0042at 50.981 kb on - strand, within DVUA0042at 51.092 kb on + strand, within DVUA0042at 51.131 kb on - strand, within DVUA0042at 51.377 kb on - strand, within DVUA0042at 51.390 kb on + strand, within DVUA0042at 51.403 kb on - strand, within DVUA0042

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) + 0.1% Yeast Extract
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48,100 + DVUA0040 0.12 +0.9
48,100 + DVUA0040 0.12 +0.1
48,100 + DVUA0040 0.12 -1.4
48,100 + DVUA0040 0.12 -0.2
48,108 - DVUA0040 0.13 -0.7
48,108 - DVUA0040 0.13 -0.7
48,108 - DVUA0040 0.13 -0.2
48,108 - DVUA0040 0.13 -0.1
48,108 - DVUA0040 0.13 +0.4
48,108 - DVUA0040 0.13 -0.4
48,158 - DVUA0040 0.17 +1.1
48,320 + DVUA0040 0.32 -0.2
48,320 + DVUA0040 0.32 +0.0
48,328 - DVUA0040 0.33 -0.1
48,356 + DVUA0040 0.35 +0.7
48,382 - DVUA0040 0.37 +0.2
48,392 - DVUA0040 0.38 +0.4
48,433 - DVUA0040 0.42 +0.1
48,468 + DVUA0040 0.45 +0.5
48,585 - DVUA0040 0.55 -0.2
48,642 - DVUA0040 0.61 -1.0
48,696 - DVUA0040 0.65 +0.1
48,729 + DVUA0040 0.68 +0.2
48,792 - DVUA0040 0.74 -0.1
48,794 + DVUA0040 0.74 +0.7
48,944 - DVUA0040 0.88 +0.2
48,960 - DVUA0040 0.89 -0.4
48,979 - -1.4
49,063 + -0.1
49,104 - -0.5
49,121 - +0.5
49,121 - -0.4
49,198 + +0.2
49,216 - -0.3
49,229 + exeA DVUA0041 0.10 -0.2
49,232 - exeA DVUA0041 0.10 +0.1
49,280 - exeA DVUA0041 0.14 +0.4
49,290 - exeA DVUA0041 0.15 -0.3
49,311 + exeA DVUA0041 0.16 -0.1
49,428 - exeA DVUA0041 0.25 -0.0
49,464 - exeA DVUA0041 0.28 -0.1
49,481 - exeA DVUA0041 0.29 -0.2
49,481 - exeA DVUA0041 0.29 +0.7
49,484 + exeA DVUA0041 0.30 +0.3
49,505 - exeA DVUA0041 0.31 -0.1
49,505 - exeA DVUA0041 0.31 +1.5
49,528 + exeA DVUA0041 0.33 -0.4
49,591 + exeA DVUA0041 0.38 -0.2
49,638 + exeA DVUA0041 0.41 -0.0
49,656 - exeA DVUA0041 0.43 -0.0
49,668 + exeA DVUA0041 0.43 -0.4
49,668 + exeA DVUA0041 0.43 +0.9
49,676 - exeA DVUA0041 0.44 -0.1
49,727 + exeA DVUA0041 0.48 -0.5
49,732 + exeA DVUA0041 0.48 -0.0
49,735 - exeA DVUA0041 0.49 +0.9
49,735 - exeA DVUA0041 0.49 -0.1
49,737 + exeA DVUA0041 0.49 +0.5
49,737 + exeA DVUA0041 0.49 -0.5
49,765 - exeA DVUA0041 0.51 +0.6
49,767 + exeA DVUA0041 0.51 +0.4
49,790 - exeA DVUA0041 0.53 +0.7
49,851 - exeA DVUA0041 0.57 +0.2
49,874 + exeA DVUA0041 0.59 +0.8
49,874 - exeA DVUA0041 0.59 +0.5
49,903 + exeA DVUA0041 0.61 -0.2
50,072 + exeA DVUA0041 0.74 -0.1
50,166 + exeA DVUA0041 0.81 -1.5
50,244 - exeA DVUA0041 0.87 -0.0
50,292 + -0.3
50,330 - +0.9
50,334 - +0.3
50,353 - -0.5
50,355 - +0.0
50,522 + -1.6
50,609 - +0.9
50,619 - -0.7
50,641 + +0.7
50,667 - +1.1
50,684 - -1.7
50,784 + DVUA0042 0.15 +0.5
50,884 + DVUA0042 0.22 -0.9
50,902 - DVUA0042 0.24 -1.4
50,902 - DVUA0042 0.24 +0.1
50,921 - DVUA0042 0.25 -0.3
50,943 - DVUA0042 0.27 -0.8
50,981 - DVUA0042 0.30 +0.3
51,092 + DVUA0042 0.38 +0.1
51,131 - DVUA0042 0.41 +1.1
51,377 - DVUA0042 0.59 -0.3
51,390 + DVUA0042 0.60 +0.3
51,403 - DVUA0042 0.61 -0.8

Or see this region's nucleotide sequence