Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1356

Experiment: Formate/Acetate-Sulfite (60/30-60 mM) + 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdnaE and DVU1355 are separated by 477 nucleotidesDVU1355 and DVU1356 are separated by 7 nucleotidesDVU1356 and DVU1357 overlap by 4 nucleotidesDVU1357 and DVU1358 are separated by 218 nucleotides DVU1353: dnaE - DNA polymerase III, alpha subunit (TIGR), at 1,430,903 to 1,434,397 dnaE DVU1355: DVU1355 - hypothetical protein (TIGR), at 1,434,875 to 1,435,243 DVU1355 DVU1356: DVU1356 - HD domain protein (TIGR), at 1,435,251 to 1,436,054 DVU1356 DVU1357: DVU1357 - conserved domain protein (TIGR), at 1,436,051 to 1,436,677 DVU1357 DVU1358: DVU1358 - hydrolase, haloacid dehalogenase-like family (TIGR), at 1,436,896 to 1,437,588 DVU1358 Position (kb) 1435 1436 1437Strain fitness (log2 ratio) -2 -1 0 1 2at 1434.464 kb on + strandat 1434.472 kb on - strandat 1434.472 kb on - strandat 1434.484 kb on + strandat 1434.484 kb on + strandat 1434.739 kb on + strandat 1434.739 kb on + strandat 1434.739 kb on + strandat 1434.747 kb on - strandat 1434.754 kb on + strandat 1434.754 kb on + strandat 1434.754 kb on + strandat 1434.762 kb on - strandat 1434.762 kb on - strandat 1434.773 kb on + strandat 1434.781 kb on - strandat 1434.956 kb on + strand, within DVU1355at 1434.992 kb on + strand, within DVU1355at 1435.023 kb on - strand, within DVU1355at 1435.093 kb on - strand, within DVU1355at 1435.167 kb on - strand, within DVU1355at 1435.206 kb on - strand, within DVU1355at 1435.211 kb on - strandat 1435.211 kb on - strandat 1435.265 kb on - strandat 1435.335 kb on + strand, within DVU1356at 1435.352 kb on + strand, within DVU1356at 1435.352 kb on + strand, within DVU1356at 1435.360 kb on - strand, within DVU1356at 1435.360 kb on - strand, within DVU1356at 1435.435 kb on - strand, within DVU1356at 1435.525 kb on + strand, within DVU1356at 1435.625 kb on - strand, within DVU1356at 1435.716 kb on - strand, within DVU1356at 1435.759 kb on - strand, within DVU1356at 1435.810 kb on + strand, within DVU1356at 1435.823 kb on + strand, within DVU1356at 1436.036 kb on + strandat 1436.087 kb on + strandat 1436.120 kb on + strand, within DVU1357at 1436.659 kb on + strandat 1436.683 kb on + strandat 1436.737 kb on - strandat 1436.804 kb on - strandat 1436.810 kb on + strandat 1436.837 kb on - strandat 1436.877 kb on - strandat 1436.968 kb on + strand, within DVU1358at 1436.976 kb on - strand, within DVU1358at 1437.052 kb on - strand, within DVU1358

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) + 0.1% Yeast Extract
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1,434,464 + +0.3
1,434,472 - +0.9
1,434,472 - +0.3
1,434,484 + +0.2
1,434,484 + -0.1
1,434,739 + -0.4
1,434,739 + -0.1
1,434,739 + -2.6
1,434,747 - -0.2
1,434,754 + -0.1
1,434,754 + +0.1
1,434,754 + -0.2
1,434,762 - -0.0
1,434,762 - -0.5
1,434,773 + -0.1
1,434,781 - -0.0
1,434,956 + DVU1355 0.22 -0.1
1,434,992 + DVU1355 0.32 +0.2
1,435,023 - DVU1355 0.40 -0.2
1,435,093 - DVU1355 0.59 -1.2
1,435,167 - DVU1355 0.79 +1.1
1,435,206 - DVU1355 0.90 -0.4
1,435,211 - -0.3
1,435,211 - -0.6
1,435,265 - -1.2
1,435,335 + DVU1356 0.10 +1.0
1,435,352 + DVU1356 0.13 -0.4
1,435,352 + DVU1356 0.13 -0.9
1,435,360 - DVU1356 0.14 +2.0
1,435,360 - DVU1356 0.14 +0.0
1,435,435 - DVU1356 0.23 -0.0
1,435,525 + DVU1356 0.34 -0.9
1,435,625 - DVU1356 0.47 -0.4
1,435,716 - DVU1356 0.58 -0.1
1,435,759 - DVU1356 0.63 +0.1
1,435,810 + DVU1356 0.70 -0.0
1,435,823 + DVU1356 0.71 +0.0
1,436,036 + -0.7
1,436,087 + +0.5
1,436,120 + DVU1357 0.11 -0.9
1,436,659 + +1.5
1,436,683 + -1.2
1,436,737 - -0.5
1,436,804 - +0.7
1,436,810 + -0.2
1,436,837 - +0.4
1,436,877 - +0.0
1,436,968 + DVU1358 0.10 -0.1
1,436,976 - DVU1358 0.12 +0.0
1,437,052 - DVU1358 0.23 +0.0

Or see this region's nucleotide sequence