Strain Fitness in Sinorhizobium meliloti 1021 around SMc03818

Experiment: Myristic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03817 and SMc03818 are separated by 189 nucleotidesSMc03818 and SMc03819 are separated by 13 nucleotidesSMc03819 and SMc03820 are separated by 32 nucleotides SMc03817: SMc03817 - sugar kinase, at 3,484,354 to 3,485,256 SMc03817 SMc03818: SMc03818 - exodeoxyribonuclease III protein, at 3,485,446 to 3,486,252 SMc03818 SMc03819: SMc03819 - hypothetical protein, at 3,486,266 to 3,486,721 SMc03819 SMc03820: SMc03820 - transcriptional regulator, at 3,486,754 to 3,487,437 SMc03820 Position (kb) 3485 3486 3487Strain fitness (log2 ratio) -2 -1 0 1at 3484.599 kb on + strand, within SMc03817at 3484.599 kb on + strand, within SMc03817at 3484.600 kb on - strand, within SMc03817at 3484.795 kb on + strand, within SMc03817at 3484.795 kb on + strand, within SMc03817at 3484.795 kb on + strand, within SMc03817at 3484.796 kb on - strand, within SMc03817at 3484.796 kb on - strand, within SMc03817at 3484.906 kb on + strand, within SMc03817at 3485.018 kb on + strand, within SMc03817at 3485.018 kb on + strand, within SMc03817at 3485.018 kb on + strand, within SMc03817at 3485.019 kb on - strand, within SMc03817at 3485.019 kb on - strand, within SMc03817at 3485.019 kb on - strand, within SMc03817at 3485.019 kb on - strand, within SMc03817at 3485.153 kb on + strand, within SMc03817at 3485.154 kb on - strand, within SMc03817at 3485.186 kb on + strandat 3485.186 kb on + strandat 3485.186 kb on + strandat 3485.186 kb on + strandat 3485.187 kb on - strandat 3485.187 kb on - strandat 3485.255 kb on - strandat 3485.611 kb on + strand, within SMc03818at 3485.611 kb on + strand, within SMc03818at 3485.612 kb on - strand, within SMc03818at 3485.613 kb on + strand, within SMc03818at 3485.639 kb on - strand, within SMc03818at 3485.770 kb on - strand, within SMc03818at 3485.770 kb on - strand, within SMc03818at 3485.770 kb on - strand, within SMc03818at 3486.071 kb on - strand, within SMc03818at 3486.071 kb on - strand, within SMc03818at 3486.086 kb on - strand, within SMc03818at 3486.743 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Myristic (C)
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3,484,599 + SMc03817 0.27 -0.2
3,484,599 + SMc03817 0.27 +0.3
3,484,600 - SMc03817 0.27 -1.8
3,484,795 + SMc03817 0.49 -0.0
3,484,795 + SMc03817 0.49 +0.3
3,484,795 + SMc03817 0.49 -0.3
3,484,796 - SMc03817 0.49 -0.2
3,484,796 - SMc03817 0.49 -0.7
3,484,906 + SMc03817 0.61 -0.2
3,485,018 + SMc03817 0.74 -0.1
3,485,018 + SMc03817 0.74 +0.8
3,485,018 + SMc03817 0.74 -0.3
3,485,019 - SMc03817 0.74 +0.2
3,485,019 - SMc03817 0.74 +1.0
3,485,019 - SMc03817 0.74 -0.0
3,485,019 - SMc03817 0.74 -1.3
3,485,153 + SMc03817 0.88 -0.4
3,485,154 - SMc03817 0.89 -0.1
3,485,186 + +1.1
3,485,186 + +0.6
3,485,186 + -0.9
3,485,186 + -1.3
3,485,187 - -0.4
3,485,187 - -0.3
3,485,255 - -1.0
3,485,611 + SMc03818 0.20 +0.2
3,485,611 + SMc03818 0.20 +1.0
3,485,612 - SMc03818 0.21 -0.8
3,485,613 + SMc03818 0.21 +0.8
3,485,639 - SMc03818 0.24 -0.8
3,485,770 - SMc03818 0.40 +0.2
3,485,770 - SMc03818 0.40 -0.5
3,485,770 - SMc03818 0.40 +0.6
3,486,071 - SMc03818 0.77 +0.1
3,486,071 - SMc03818 0.77 +0.7
3,486,086 - SMc03818 0.79 -0.3
3,486,743 + +0.1

Or see this region's nucleotide sequence