Strain Fitness in Sinorhizobium meliloti 1021 around SMc03167

Experiment: Myristic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03166 and SMc03167 are separated by 169 nucleotidesSMc03167 and SMc03168 are separated by 28 nucleotides SMc03166: SMc03166 - hypothetical protein, at 3,125,900 to 3,126,985 SMc03166 SMc03167: SMc03167 - multidrug efflux system protein, at 3,127,155 to 3,128,744 SMc03167 SMc03168: SMc03168 - multidrug efflux system protein, at 3,128,773 to 3,129,921 SMc03168 Position (kb) 3127 3128 3129Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3126.243 kb on + strand, within SMc03166at 3126.243 kb on + strand, within SMc03166at 3126.243 kb on + strand, within SMc03166at 3126.393 kb on + strand, within SMc03166at 3126.393 kb on + strand, within SMc03166at 3126.393 kb on + strand, within SMc03166at 3126.394 kb on - strand, within SMc03166at 3126.442 kb on - strandat 3126.464 kb on - strand, within SMc03166at 3126.474 kb on + strand, within SMc03166at 3126.555 kb on + strand, within SMc03166at 3126.617 kb on + strand, within SMc03166at 3127.002 kb on - strandat 3127.002 kb on - strandat 3127.075 kb on - strandat 3127.245 kb on + strandat 3127.245 kb on + strandat 3127.245 kb on + strandat 3127.245 kb on + strandat 3127.420 kb on + strand, within SMc03167at 3127.448 kb on + strand, within SMc03167at 3127.449 kb on - strand, within SMc03167at 3127.449 kb on - strand, within SMc03167at 3127.449 kb on - strand, within SMc03167at 3127.502 kb on - strand, within SMc03167at 3127.802 kb on - strand, within SMc03167at 3127.837 kb on + strandat 3127.837 kb on + strand, within SMc03167at 3127.837 kb on + strand, within SMc03167at 3127.837 kb on + strand, within SMc03167at 3127.837 kb on + strand, within SMc03167at 3127.837 kb on + strand, within SMc03167at 3127.838 kb on - strand, within SMc03167at 3127.838 kb on - strand, within SMc03167at 3127.838 kb on - strand, within SMc03167at 3127.838 kb on - strand, within SMc03167at 3127.838 kb on - strand, within SMc03167at 3127.838 kb on - strand, within SMc03167at 3127.838 kb on - strand, within SMc03167at 3127.955 kb on - strand, within SMc03167at 3127.955 kb on - strand, within SMc03167at 3128.051 kb on - strand, within SMc03167at 3128.684 kb on + strandat 3128.703 kb on + strandat 3128.704 kb on - strandat 3128.774 kb on + strandat 3129.017 kb on + strand, within SMc03168at 3129.018 kb on - strand, within SMc03168at 3129.094 kb on - strand, within SMc03168at 3129.095 kb on + strand, within SMc03168at 3129.095 kb on + strand, within SMc03168at 3129.096 kb on - strand, within SMc03168at 3129.202 kb on + strand, within SMc03168at 3129.202 kb on + strand, within SMc03168at 3129.203 kb on - strand, within SMc03168at 3129.203 kb on - strand, within SMc03168at 3129.322 kb on - strand, within SMc03168at 3129.340 kb on + strand, within SMc03168at 3129.341 kb on - strand, within SMc03168at 3129.594 kb on - strand, within SMc03168at 3129.671 kb on + strand, within SMc03168at 3129.671 kb on + strand, within SMc03168at 3129.672 kb on - strand, within SMc03168at 3129.672 kb on - strand, within SMc03168at 3129.672 kb on - strand, within SMc03168at 3129.712 kb on + strand, within SMc03168at 3129.712 kb on + strand, within SMc03168at 3129.712 kb on + strand, within SMc03168at 3129.712 kb on + strand, within SMc03168at 3129.712 kb on + strand, within SMc03168at 3129.712 kb on + strand, within SMc03168at 3129.713 kb on - strand, within SMc03168at 3129.713 kb on - strand, within SMc03168at 3129.713 kb on - strand, within SMc03168at 3129.713 kb on - strand, within SMc03168at 3129.716 kb on + strand, within SMc03168at 3129.716 kb on + strand, within SMc03168at 3129.716 kb on + strand, within SMc03168at 3129.717 kb on - strand, within SMc03168at 3129.717 kb on - strand, within SMc03168at 3129.717 kb on - strand, within SMc03168

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Per-strain Table

Position Strand Gene LocusTag Fraction Myristic (C)
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3,126,243 + SMc03166 0.32 -0.2
3,126,243 + SMc03166 0.32 -1.2
3,126,243 + SMc03166 0.32 -0.2
3,126,393 + SMc03166 0.45 +0.4
3,126,393 + SMc03166 0.45 +0.0
3,126,393 + SMc03166 0.45 -1.7
3,126,394 - SMc03166 0.45 -0.2
3,126,442 - -1.8
3,126,464 - SMc03166 0.52 -0.9
3,126,474 + SMc03166 0.53 +0.0
3,126,555 + SMc03166 0.60 -0.2
3,126,617 + SMc03166 0.66 -1.1
3,127,002 - -0.3
3,127,002 - +0.1
3,127,075 - -0.9
3,127,245 + -2.4
3,127,245 + -2.1
3,127,245 + -1.8
3,127,245 + -2.0
3,127,420 + SMc03167 0.17 -0.5
3,127,448 + SMc03167 0.18 +1.5
3,127,449 - SMc03167 0.18 -3.6
3,127,449 - SMc03167 0.18 -0.5
3,127,449 - SMc03167 0.18 +0.7
3,127,502 - SMc03167 0.22 -1.4
3,127,802 - SMc03167 0.41 -2.6
3,127,837 + -1.1
3,127,837 + SMc03167 0.43 -1.9
3,127,837 + SMc03167 0.43 -1.3
3,127,837 + SMc03167 0.43 -2.3
3,127,837 + SMc03167 0.43 -3.1
3,127,837 + SMc03167 0.43 -1.7
3,127,838 - SMc03167 0.43 -0.6
3,127,838 - SMc03167 0.43 -1.4
3,127,838 - SMc03167 0.43 -1.6
3,127,838 - SMc03167 0.43 -1.8
3,127,838 - SMc03167 0.43 -3.4
3,127,838 - SMc03167 0.43 -1.6
3,127,838 - SMc03167 0.43 -1.2
3,127,955 - SMc03167 0.50 -2.8
3,127,955 - SMc03167 0.50 -1.1
3,128,051 - SMc03167 0.56 -2.9
3,128,684 + -4.6
3,128,703 + -2.6
3,128,704 - -1.9
3,128,774 + -1.5
3,129,017 + SMc03168 0.21 -2.6
3,129,018 - SMc03168 0.21 -3.8
3,129,094 - SMc03168 0.28 -0.5
3,129,095 + SMc03168 0.28 -2.4
3,129,095 + SMc03168 0.28 -2.9
3,129,096 - SMc03168 0.28 -2.0
3,129,202 + SMc03168 0.37 -3.1
3,129,202 + SMc03168 0.37 -3.4
3,129,203 - SMc03168 0.37 -2.0
3,129,203 - SMc03168 0.37 -1.5
3,129,322 - SMc03168 0.48 -1.9
3,129,340 + SMc03168 0.49 +0.2
3,129,341 - SMc03168 0.49 -2.1
3,129,594 - SMc03168 0.71 -2.2
3,129,671 + SMc03168 0.78 -3.0
3,129,671 + SMc03168 0.78 -1.1
3,129,672 - SMc03168 0.78 -1.1
3,129,672 - SMc03168 0.78 -2.4
3,129,672 - SMc03168 0.78 -1.6
3,129,712 + SMc03168 0.82 -4.6
3,129,712 + SMc03168 0.82 -2.2
3,129,712 + SMc03168 0.82 -1.8
3,129,712 + SMc03168 0.82 -2.1
3,129,712 + SMc03168 0.82 -3.2
3,129,712 + SMc03168 0.82 -0.9
3,129,713 - SMc03168 0.82 -4.4
3,129,713 - SMc03168 0.82 -1.5
3,129,713 - SMc03168 0.82 +1.5
3,129,713 - SMc03168 0.82 -2.1
3,129,716 + SMc03168 0.82 -2.8
3,129,716 + SMc03168 0.82 -2.5
3,129,716 + SMc03168 0.82 -1.6
3,129,717 - SMc03168 0.82 -2.1
3,129,717 - SMc03168 0.82 -1.4
3,129,717 - SMc03168 0.82 -2.8

Or see this region's nucleotide sequence