Strain Fitness in Sinorhizobium meliloti 1021 around SMc02422

Experiment: Myristic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt SMc02406: SMc02406 - hypothetical protein, at 1,158,131 to 1,162,366 SMc02406 SMc02422: SMc02422 - hypothetical protein, at 1,158,929 to 1,159,585 SMc02422 Position (kb) 1158 1159 1160Strain fitness (log2 ratio) -2 -1 0 1 2at 1157.993 kb on + strandat 1157.993 kb on + strandat 1157.993 kb on + strandat 1158.090 kb on + strandat 1158.091 kb on - strandat 1158.164 kb on + strandat 1158.171 kb on + strandat 1158.172 kb on - strandat 1158.219 kb on + strandat 1158.228 kb on + strandat 1158.249 kb on + strandat 1158.249 kb on + strandat 1158.249 kb on + strandat 1158.250 kb on - strandat 1158.250 kb on - strandat 1158.348 kb on + strandat 1158.348 kb on + strandat 1158.348 kb on + strandat 1158.348 kb on + strandat 1158.351 kb on - strandat 1158.351 kb on - strandat 1158.451 kb on + strandat 1158.451 kb on + strandat 1158.518 kb on - strandat 1158.518 kb on - strandat 1158.518 kb on - strandat 1158.520 kb on + strandat 1158.521 kb on - strandat 1158.568 kb on + strand, within SMc02406at 1158.597 kb on + strand, within SMc02406at 1158.597 kb on + strand, within SMc02406at 1158.669 kb on - strand, within SMc02406at 1158.669 kb on - strand, within SMc02406at 1158.690 kb on + strand, within SMc02406at 1158.691 kb on - strand, within SMc02406at 1158.691 kb on - strand, within SMc02406at 1158.765 kb on + strand, within SMc02406at 1158.765 kb on + strandat 1158.765 kb on + strand, within SMc02406at 1158.765 kb on + strand, within SMc02406at 1158.766 kb on - strand, within SMc02406at 1158.766 kb on - strand, within SMc02406at 1158.766 kb on - strand, within SMc02406at 1158.766 kb on - strand, within SMc02406at 1158.776 kb on + strand, within SMc02406at 1158.776 kb on + strand, within SMc02406at 1158.777 kb on - strand, within SMc02406at 1158.798 kb on + strand, within SMc02406at 1158.798 kb on + strand, within SMc02406at 1158.842 kb on - strand, within SMc02406at 1158.842 kb on - strand, within SMc02406at 1159.014 kb on - strandat 1159.014 kb on - strandat 1159.082 kb on + strandat 1159.082 kb on + strandat 1159.082 kb on + strandat 1159.083 kb on - strandat 1159.083 kb on - strandat 1159.107 kb on + strandat 1159.138 kb on - strandat 1159.633 kb on - strand, within SMc02406at 1159.633 kb on - strand, within SMc02406at 1159.633 kb on - strand, within SMc02406at 1159.638 kb on + strand, within SMc02406at 1159.784 kb on + strand, within SMc02406at 1159.784 kb on + strand, within SMc02406at 1159.785 kb on - strand, within SMc02406at 1159.785 kb on - strand, within SMc02406at 1159.785 kb on - strand, within SMc02406at 1159.785 kb on - strand, within SMc02406at 1159.785 kb on - strand, within SMc02406at 1159.785 kb on - strand, within SMc02406at 1159.810 kb on + strand, within SMc02406at 1159.860 kb on + strand, within SMc02406at 1159.860 kb on + strand, within SMc02406at 1159.860 kb on + strand, within SMc02406at 1159.861 kb on - strand, within SMc02406at 1159.861 kb on - strand, within SMc02406at 1159.864 kb on + strand, within SMc02406at 1159.864 kb on + strand, within SMc02406at 1159.864 kb on + strand, within SMc02406at 1159.864 kb on + strand, within SMc02406at 1159.871 kb on - strand, within SMc02406at 1159.872 kb on + strand, within SMc02406at 1159.873 kb on - strand, within SMc02406at 1159.873 kb on - strand, within SMc02406at 1159.873 kb on - strand, within SMc02406at 1159.882 kb on + strand, within SMc02406at 1159.883 kb on - strand, within SMc02406at 1159.899 kb on + strand, within SMc02406at 1159.900 kb on - strand, within SMc02406at 1159.900 kb on - strand, within SMc02406at 1159.900 kb on - strand, within SMc02406at 1159.968 kb on - strand, within SMc02406at 1159.968 kb on - strand, within SMc02406at 1160.002 kb on + strand, within SMc02406at 1160.290 kb on - strand, within SMc02406at 1160.290 kb on - strand, within SMc02406at 1160.307 kb on + strand, within SMc02406at 1160.308 kb on - strand, within SMc02406at 1160.433 kb on + strand, within SMc02406at 1160.473 kb on + strand, within SMc02406at 1160.473 kb on + strand, within SMc02406at 1160.474 kb on - strand, within SMc02406at 1160.474 kb on - strand, within SMc02406at 1160.474 kb on - strand, within SMc02406at 1160.542 kb on - strand, within SMc02406

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Per-strain Table

Position Strand Gene LocusTag Fraction Myristic (C)
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1,157,993 + +0.9
1,157,993 + -0.0
1,157,993 + -0.1
1,158,090 + -1.0
1,158,091 - -0.3
1,158,164 + -0.1
1,158,171 + -1.2
1,158,172 - -0.0
1,158,219 + -0.4
1,158,228 + -1.3
1,158,249 + -0.7
1,158,249 + -1.3
1,158,249 + +1.1
1,158,250 - -2.0
1,158,250 - -0.2
1,158,348 + -0.3
1,158,348 + +0.0
1,158,348 + -1.0
1,158,348 + -0.2
1,158,351 - +0.8
1,158,351 - +0.1
1,158,451 + +0.3
1,158,451 + -0.7
1,158,518 - -0.3
1,158,518 - -1.7
1,158,518 - -0.5
1,158,520 + -0.1
1,158,521 - +0.8
1,158,568 + SMc02406 0.10 -0.3
1,158,597 + SMc02406 0.11 +0.1
1,158,597 + SMc02406 0.11 +0.4
1,158,669 - SMc02406 0.13 -0.0
1,158,669 - SMc02406 0.13 -0.4
1,158,690 + SMc02406 0.13 -0.0
1,158,691 - SMc02406 0.13 -0.7
1,158,691 - SMc02406 0.13 -0.0
1,158,765 + SMc02406 0.15 +0.4
1,158,765 + +1.3
1,158,765 + SMc02406 0.15 +0.1
1,158,765 + SMc02406 0.15 -0.8
1,158,766 - SMc02406 0.15 +0.4
1,158,766 - SMc02406 0.15 +0.2
1,158,766 - SMc02406 0.15 -0.3
1,158,766 - SMc02406 0.15 -1.9
1,158,776 + SMc02406 0.15 -0.2
1,158,776 + SMc02406 0.15 -0.5
1,158,777 - SMc02406 0.15 -0.9
1,158,798 + SMc02406 0.16 +0.3
1,158,798 + SMc02406 0.16 +2.0
1,158,842 - SMc02406 0.17 +0.8
1,158,842 - SMc02406 0.17 +1.5
1,159,014 - -0.8
1,159,014 - +0.3
1,159,082 + -0.4
1,159,082 + +0.2
1,159,082 + +1.0
1,159,083 - +0.9
1,159,083 - +0.8
1,159,107 + +0.1
1,159,138 - +0.2
1,159,633 - SMc02406 0.35 -0.7
1,159,633 - SMc02406 0.35 -1.6
1,159,633 - SMc02406 0.35 -0.7
1,159,638 + SMc02406 0.36 +1.1
1,159,784 + SMc02406 0.39 -0.1
1,159,784 + SMc02406 0.39 -0.1
1,159,785 - SMc02406 0.39 +2.5
1,159,785 - SMc02406 0.39 +1.3
1,159,785 - SMc02406 0.39 -0.0
1,159,785 - SMc02406 0.39 -0.1
1,159,785 - SMc02406 0.39 -0.2
1,159,785 - SMc02406 0.39 +0.3
1,159,810 + SMc02406 0.40 -0.1
1,159,860 + SMc02406 0.41 +0.9
1,159,860 + SMc02406 0.41 -0.5
1,159,860 + SMc02406 0.41 +1.3
1,159,861 - SMc02406 0.41 -0.7
1,159,861 - SMc02406 0.41 +0.3
1,159,864 + SMc02406 0.41 +0.4
1,159,864 + SMc02406 0.41 -0.7
1,159,864 + SMc02406 0.41 +0.4
1,159,864 + SMc02406 0.41 +0.2
1,159,871 - SMc02406 0.41 +0.8
1,159,872 + SMc02406 0.41 +1.1
1,159,873 - SMc02406 0.41 -1.7
1,159,873 - SMc02406 0.41 +1.6
1,159,873 - SMc02406 0.41 +0.1
1,159,882 + SMc02406 0.41 +0.3
1,159,883 - SMc02406 0.41 +0.2
1,159,899 + SMc02406 0.42 -0.6
1,159,900 - SMc02406 0.42 +1.0
1,159,900 - SMc02406 0.42 +1.1
1,159,900 - SMc02406 0.42 +0.2
1,159,968 - SMc02406 0.43 -1.7
1,159,968 - SMc02406 0.43 -0.6
1,160,002 + SMc02406 0.44 +0.5
1,160,290 - SMc02406 0.51 +0.4
1,160,290 - SMc02406 0.51 -0.9
1,160,307 + SMc02406 0.51 -0.1
1,160,308 - SMc02406 0.51 +0.3
1,160,433 + SMc02406 0.54 -0.2
1,160,473 + SMc02406 0.55 +0.3
1,160,473 + SMc02406 0.55 -0.7
1,160,474 - SMc02406 0.55 +0.8
1,160,474 - SMc02406 0.55 -0.1
1,160,474 - SMc02406 0.55 -0.1
1,160,542 - SMc02406 0.57 +0.0

Or see this region's nucleotide sequence