Strain Fitness in Sinorhizobium meliloti 1021 around SMc02369

Experiment: Myristic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02368 and SMc02369 are separated by 10 nucleotidesSMc02369 and SMc02370 are separated by 362 nucleotides SMc02368: SMc02368 - bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase, at 1,116,048 to 1,119,008 SMc02368 SMc02369: SMc02369 - sensor histidine kinase transmembrane protein, at 1,119,019 to 1,121,337 SMc02369 SMc02370: SMc02370 - aminopeptidase N, at 1,121,700 to 1,124,354 SMc02370 Position (kb) 1119 1120 1121 1122Strain fitness (log2 ratio) -2 -1 0 1at 1118.350 kb on - strand, within SMc02368at 1118.350 kb on - strand, within SMc02368at 1118.350 kb on - strand, within SMc02368at 1118.425 kb on - strand, within SMc02368at 1118.624 kb on - strand, within SMc02368at 1118.624 kb on - strand, within SMc02368at 1118.710 kb on + strand, within SMc02368at 1118.710 kb on + strand, within SMc02368at 1118.711 kb on - strand, within SMc02368at 1118.711 kb on - strand, within SMc02368at 1118.711 kb on - strand, within SMc02368at 1118.735 kb on + strandat 1118.735 kb on + strandat 1118.919 kb on + strandat 1119.007 kb on - strandat 1121.536 kb on - strandat 1121.553 kb on - strandat 1121.846 kb on + strandat 1121.846 kb on + strandat 1121.874 kb on - strandat 1121.874 kb on - strandat 1122.215 kb on + strand, within SMc02370at 1122.215 kb on + strand, within SMc02370at 1122.253 kb on + strand, within SMc02370at 1122.253 kb on + strand, within SMc02370at 1122.262 kb on + strand, within SMc02370at 1122.263 kb on - strand, within SMc02370

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Per-strain Table

Position Strand Gene LocusTag Fraction Myristic (C)
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1,118,350 - SMc02368 0.78 +1.3
1,118,350 - SMc02368 0.78 +0.9
1,118,350 - SMc02368 0.78 -0.2
1,118,425 - SMc02368 0.80 +0.9
1,118,624 - SMc02368 0.87 +0.2
1,118,624 - SMc02368 0.87 -0.7
1,118,710 + SMc02368 0.90 +0.1
1,118,710 + SMc02368 0.90 +0.8
1,118,711 - SMc02368 0.90 +0.7
1,118,711 - SMc02368 0.90 +0.8
1,118,711 - SMc02368 0.90 +0.6
1,118,735 + +0.7
1,118,735 + +1.1
1,118,919 + -0.3
1,119,007 - -0.1
1,121,536 - -2.1
1,121,553 - +1.3
1,121,846 + +0.8
1,121,846 + +0.9
1,121,874 - -0.1
1,121,874 - +1.1
1,122,215 + SMc02370 0.19 -0.0
1,122,215 + SMc02370 0.19 -1.7
1,122,253 + SMc02370 0.21 +0.8
1,122,253 + SMc02370 0.21 -0.2
1,122,262 + SMc02370 0.21 -0.2
1,122,263 - SMc02370 0.21 -0.2

Or see this region's nucleotide sequence