Strain Fitness in Sinorhizobium meliloti 1021 around SMc02048

Experiment: Myristic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02049 and SMc02048 overlap by 1 nucleotidesSMc02048 and SMc02047 are separated by 16 nucleotides SMc02049: SMc02049 - glycine dehydrogenase, at 1,670,379 to 1,673,243 SMc02049 SMc02048: SMc02048 - glycine cleavage system protein H, at 1,673,243 to 1,673,605 SMc02048 SMc02047: SMc02047 - glycine cleavage system aminomethyltransferase T, at 1,673,622 to 1,674,761 SMc02047 Position (kb) 1673 1674Strain fitness (log2 ratio) -3 -2 -1 0 1at 1672.262 kb on + strand, within SMc02049at 1672.355 kb on + strand, within SMc02049at 1672.355 kb on + strand, within SMc02049at 1672.356 kb on - strand, within SMc02049at 1672.357 kb on + strand, within SMc02049at 1672.357 kb on + strand, within SMc02049at 1672.376 kb on + strand, within SMc02049at 1672.377 kb on - strand, within SMc02049at 1672.377 kb on - strand, within SMc02049at 1672.377 kb on - strand, within SMc02049at 1672.378 kb on + strand, within SMc02049at 1672.378 kb on + strand, within SMc02049at 1672.378 kb on + strand, within SMc02049at 1672.379 kb on - strand, within SMc02049at 1672.379 kb on - strand, within SMc02049at 1672.568 kb on - strand, within SMc02049at 1672.843 kb on + strand, within SMc02049at 1672.843 kb on + strand, within SMc02049at 1672.843 kb on + strand, within SMc02049at 1672.889 kb on - strand, within SMc02049at 1672.896 kb on - strand, within SMc02049at 1672.896 kb on - strand, within SMc02049at 1672.896 kb on - strand, within SMc02049at 1672.906 kb on + strand, within SMc02049at 1672.963 kb on + strandat 1673.107 kb on - strandat 1673.107 kb on - strandat 1673.209 kb on + strandat 1673.210 kb on - strandat 1673.210 kb on - strandat 1673.222 kb on + strandat 1673.415 kb on + strand, within SMc02048at 1673.415 kb on + strand, within SMc02048at 1673.416 kb on - strand, within SMc02048at 1673.605 kb on + strandat 1673.605 kb on + strandat 1673.606 kb on - strandat 1673.632 kb on + strandat 1673.633 kb on - strandat 1673.677 kb on + strandat 1673.677 kb on + strandat 1673.678 kb on - strandat 1673.678 kb on - strandat 1673.678 kb on - strandat 1673.678 kb on - strandat 1673.737 kb on + strand, within SMc02047at 1674.009 kb on - strand, within SMc02047at 1674.032 kb on - strand, within SMc02047at 1674.150 kb on + strand, within SMc02047at 1674.176 kb on - strand, within SMc02047

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Per-strain Table

Position Strand Gene LocusTag Fraction Myristic (C)
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1,672,262 + SMc02049 0.66 -1.2
1,672,355 + SMc02049 0.69 -3.2
1,672,355 + SMc02049 0.69 -0.7
1,672,356 - SMc02049 0.69 -1.7
1,672,357 + SMc02049 0.69 +0.5
1,672,357 + SMc02049 0.69 -0.8
1,672,376 + SMc02049 0.70 -0.5
1,672,377 - SMc02049 0.70 -1.6
1,672,377 - SMc02049 0.70 -1.2
1,672,377 - SMc02049 0.70 -1.0
1,672,378 + SMc02049 0.70 -0.2
1,672,378 + SMc02049 0.70 -1.3
1,672,378 + SMc02049 0.70 -2.8
1,672,379 - SMc02049 0.70 -0.6
1,672,379 - SMc02049 0.70 +0.6
1,672,568 - SMc02049 0.76 -2.0
1,672,843 + SMc02049 0.86 -0.9
1,672,843 + SMc02049 0.86 +0.7
1,672,843 + SMc02049 0.86 -0.4
1,672,889 - SMc02049 0.88 -2.3
1,672,896 - SMc02049 0.88 -1.1
1,672,896 - SMc02049 0.88 -1.5
1,672,896 - SMc02049 0.88 -2.1
1,672,906 + SMc02049 0.88 -1.4
1,672,963 + -1.8
1,673,107 - -0.5
1,673,107 - -1.9
1,673,209 + -1.7
1,673,210 - -2.3
1,673,210 - -1.2
1,673,222 + +0.3
1,673,415 + SMc02048 0.47 -2.6
1,673,415 + SMc02048 0.47 -1.2
1,673,416 - SMc02048 0.48 -1.2
1,673,605 + -2.6
1,673,605 + -1.4
1,673,606 - -0.5
1,673,632 + +0.4
1,673,633 - -0.1
1,673,677 + -0.8
1,673,677 + -1.2
1,673,678 - -0.1
1,673,678 - -0.3
1,673,678 - -0.1
1,673,678 - -0.5
1,673,737 + SMc02047 0.10 -1.1
1,674,009 - SMc02047 0.34 -1.2
1,674,032 - SMc02047 0.36 -1.1
1,674,150 + SMc02047 0.46 -2.2
1,674,176 - SMc02047 0.49 -1.1

Or see this region's nucleotide sequence