Strain Fitness in Sinorhizobium meliloti 1021 around SMc01647

Experiment: Myristic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01645 and SMc01646 are separated by 29 nucleotidesSMc01646 and SMc01647 are separated by 123 nucleotidesSMc01647 and SMc01648 are separated by 79 nucleotides SMc01645: SMc01645 - ABC transporter ATP-binding protein, at 2,440,335 to 2,441,966 SMc01645 SMc01646: SMc01646 - hypothetical protein, at 2,441,996 to 2,442,790 SMc01646 SMc01647: SMc01647 - periplasmic binding protein, at 2,442,914 to 2,444,503 SMc01647 SMc01648: SMc01648 - hypothetical protein, at 2,444,583 to 2,446,580 SMc01648 Position (kb) 2442 2443 2444 2445Strain fitness (log2 ratio) -2 -1 0 1at 2442.000 kb on + strandat 2442.001 kb on - strandat 2442.001 kb on - strandat 2442.136 kb on + strand, within SMc01646at 2442.213 kb on + strand, within SMc01646at 2442.330 kb on + strand, within SMc01646at 2442.331 kb on - strand, within SMc01646at 2442.361 kb on + strand, within SMc01646at 2442.411 kb on + strand, within SMc01646at 2442.412 kb on - strand, within SMc01646at 2442.412 kb on - strand, within SMc01646at 2442.415 kb on + strand, within SMc01646at 2442.415 kb on + strand, within SMc01646at 2442.415 kb on + strand, within SMc01646at 2442.415 kb on + strand, within SMc01646at 2442.415 kb on + strand, within SMc01646at 2442.415 kb on + strand, within SMc01646at 2442.416 kb on - strand, within SMc01646at 2442.416 kb on - strand, within SMc01646at 2442.416 kb on - strand, within SMc01646at 2442.416 kb on - strand, within SMc01646at 2442.474 kb on + strand, within SMc01646at 2442.641 kb on + strand, within SMc01646at 2442.641 kb on + strand, within SMc01646at 2442.641 kb on + strand, within SMc01646at 2442.678 kb on + strand, within SMc01646at 2442.820 kb on + strandat 2442.821 kb on - strandat 2442.951 kb on + strandat 2443.130 kb on + strand, within SMc01647at 2443.130 kb on + strand, within SMc01647at 2443.130 kb on + strand, within SMc01647at 2443.130 kb on + strand, within SMc01647at 2443.131 kb on - strand, within SMc01647at 2443.143 kb on + strand, within SMc01647at 2443.475 kb on + strand, within SMc01647at 2443.475 kb on + strand, within SMc01647at 2443.475 kb on + strand, within SMc01647at 2443.476 kb on - strand, within SMc01647at 2443.542 kb on - strand, within SMc01647at 2443.556 kb on + strand, within SMc01647at 2443.556 kb on + strand, within SMc01647at 2443.556 kb on + strand, within SMc01647at 2443.556 kb on + strand, within SMc01647at 2443.557 kb on - strand, within SMc01647at 2443.557 kb on - strand, within SMc01647at 2443.557 kb on - strand, within SMc01647at 2443.619 kb on + strand, within SMc01647at 2443.785 kb on - strand, within SMc01647at 2443.785 kb on - strand, within SMc01647at 2443.833 kb on + strand, within SMc01647at 2443.833 kb on + strand, within SMc01647at 2443.851 kb on - strand, within SMc01647at 2443.870 kb on + strand, within SMc01647at 2443.895 kb on + strand, within SMc01647at 2443.896 kb on - strand, within SMc01647at 2443.970 kb on + strand, within SMc01647at 2444.035 kb on + strand, within SMc01647at 2444.036 kb on - strand, within SMc01647at 2444.036 kb on - strand, within SMc01647at 2444.122 kb on - strand, within SMc01647at 2444.187 kb on - strand, within SMc01647at 2444.187 kb on - strand, within SMc01647at 2444.232 kb on - strand, within SMc01647at 2444.340 kb on - strand, within SMc01647at 2444.340 kb on - strand, within SMc01647at 2444.403 kb on - strandat 2444.501 kb on + strandat 2444.501 kb on + strandat 2444.502 kb on - strandat 2444.502 kb on - strandat 2444.595 kb on - strandat 2444.718 kb on + strandat 2444.719 kb on - strandat 2444.847 kb on + strand, within SMc01648at 2444.847 kb on + strand, within SMc01648at 2444.849 kb on + strand, within SMc01648at 2444.850 kb on - strand, within SMc01648at 2444.850 kb on - strand, within SMc01648at 2444.850 kb on - strand, within SMc01648at 2445.030 kb on + strand, within SMc01648at 2445.031 kb on - strand, within SMc01648at 2445.044 kb on - strand, within SMc01648at 2445.049 kb on - strand, within SMc01648at 2445.049 kb on - strand, within SMc01648at 2445.049 kb on - strand, within SMc01648at 2445.387 kb on + strand, within SMc01648at 2445.387 kb on + strand, within SMc01648

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Per-strain Table

Position Strand Gene LocusTag Fraction Myristic (C)
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2,442,000 + +0.4
2,442,001 - +0.2
2,442,001 - -1.0
2,442,136 + SMc01646 0.18 +0.7
2,442,213 + SMc01646 0.27 -0.1
2,442,330 + SMc01646 0.42 +0.1
2,442,331 - SMc01646 0.42 +0.6
2,442,361 + SMc01646 0.46 +0.8
2,442,411 + SMc01646 0.52 -0.5
2,442,412 - SMc01646 0.52 -0.2
2,442,412 - SMc01646 0.52 -0.3
2,442,415 + SMc01646 0.53 -0.4
2,442,415 + SMc01646 0.53 +0.5
2,442,415 + SMc01646 0.53 +0.2
2,442,415 + SMc01646 0.53 -1.8
2,442,415 + SMc01646 0.53 -0.1
2,442,415 + SMc01646 0.53 -1.2
2,442,416 - SMc01646 0.53 -0.6
2,442,416 - SMc01646 0.53 +0.6
2,442,416 - SMc01646 0.53 -1.0
2,442,416 - SMc01646 0.53 +0.0
2,442,474 + SMc01646 0.60 +0.5
2,442,641 + SMc01646 0.81 -1.0
2,442,641 + SMc01646 0.81 +0.4
2,442,641 + SMc01646 0.81 -0.4
2,442,678 + SMc01646 0.86 -0.7
2,442,820 + -0.7
2,442,821 - -0.4
2,442,951 + -0.1
2,443,130 + SMc01647 0.14 -0.6
2,443,130 + SMc01647 0.14 -0.8
2,443,130 + SMc01647 0.14 -0.1
2,443,130 + SMc01647 0.14 -0.4
2,443,131 - SMc01647 0.14 -1.2
2,443,143 + SMc01647 0.14 +0.4
2,443,475 + SMc01647 0.35 -0.3
2,443,475 + SMc01647 0.35 -1.9
2,443,475 + SMc01647 0.35 -0.3
2,443,476 - SMc01647 0.35 +0.2
2,443,542 - SMc01647 0.39 +0.1
2,443,556 + SMc01647 0.40 -0.6
2,443,556 + SMc01647 0.40 -0.4
2,443,556 + SMc01647 0.40 +0.9
2,443,556 + SMc01647 0.40 +0.4
2,443,557 - SMc01647 0.40 -1.1
2,443,557 - SMc01647 0.40 -0.1
2,443,557 - SMc01647 0.40 -0.2
2,443,619 + SMc01647 0.44 +0.3
2,443,785 - SMc01647 0.55 -0.0
2,443,785 - SMc01647 0.55 +0.1
2,443,833 + SMc01647 0.58 -1.4
2,443,833 + SMc01647 0.58 -0.4
2,443,851 - SMc01647 0.59 -1.3
2,443,870 + SMc01647 0.60 -0.6
2,443,895 + SMc01647 0.62 -1.5
2,443,896 - SMc01647 0.62 -0.2
2,443,970 + SMc01647 0.66 +0.1
2,444,035 + SMc01647 0.71 -1.0
2,444,036 - SMc01647 0.71 -0.9
2,444,036 - SMc01647 0.71 +0.4
2,444,122 - SMc01647 0.76 +1.0
2,444,187 - SMc01647 0.80 -0.1
2,444,187 - SMc01647 0.80 -0.1
2,444,232 - SMc01647 0.83 -0.1
2,444,340 - SMc01647 0.90 -0.8
2,444,340 - SMc01647 0.90 -0.8
2,444,403 - +0.6
2,444,501 + -0.0
2,444,501 + -1.8
2,444,502 - -0.6
2,444,502 - +0.3
2,444,595 - -0.4
2,444,718 + -0.1
2,444,719 - -0.8
2,444,847 + SMc01648 0.13 -0.1
2,444,847 + SMc01648 0.13 +0.7
2,444,849 + SMc01648 0.13 -0.4
2,444,850 - SMc01648 0.13 +0.6
2,444,850 - SMc01648 0.13 -0.5
2,444,850 - SMc01648 0.13 +0.1
2,445,030 + SMc01648 0.22 -0.6
2,445,031 - SMc01648 0.22 -0.5
2,445,044 - SMc01648 0.23 -0.2
2,445,049 - SMc01648 0.23 -0.1
2,445,049 - SMc01648 0.23 -1.8
2,445,049 - SMc01648 0.23 -0.1
2,445,387 + SMc01648 0.40 -0.2
2,445,387 + SMc01648 0.40 +1.1

Or see this region's nucleotide sequence