Strain Fitness in Sinorhizobium meliloti 1021 around SMc00328

Experiment: Myristic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00327 and SMc00328 are separated by 49 nucleotidesSMc00328 and SMc00329 are separated by 377 nucleotidesSMc00329 and SMc00330 are separated by 30 nucleotides SMc00327: SMc00327 - 3-oxoacyl-ACP synthase, at 281,606 to 282,826 SMc00327 SMc00328: SMc00328 - 3-hydroxydecanoyl-ACP dehydratase, at 282,876 to 283,391 SMc00328 SMc00329: SMc00329 - iron response regulator protein, at 283,769 to 284,191 SMc00329 SMc00330: SMc00330 - transmembrane protein, at 284,222 to 284,857 SMc00330 Position (kb) 282 283 284Strain fitness (log2 ratio) -1 0 1at 283.437 kb on - strandat 283.437 kb on - strandat 283.516 kb on - strandat 283.533 kb on - strandat 283.696 kb on - strandat 283.715 kb on + strandat 283.716 kb on - strandat 283.750 kb on + strandat 284.018 kb on + strand, within SMc00329at 284.018 kb on + strand, within SMc00329at 284.019 kb on - strand, within SMc00329at 284.019 kb on - strand, within SMc00329at 284.160 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Myristic (C)
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283,437 - -0.7
283,437 - -0.2
283,516 - -0.3
283,533 - +1.6
283,696 - +0.3
283,715 + +0.3
283,716 - -0.8
283,750 + -0.2
284,018 + SMc00329 0.59 -0.5
284,018 + SMc00329 0.59 -0.4
284,019 - SMc00329 0.59 +0.8
284,019 - SMc00329 0.59 -1.7
284,160 + +0.7

Or see this region's nucleotide sequence