Strain Fitness in Sinorhizobium meliloti 1021 around SMc00260

Experiment: Myristic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00258 and SMc00259 are separated by 16 nucleotidesSMc00259 and SMc00260 overlap by 4 nucleotidesSMc00260 and SMc00261 overlap by 4 nucleotides SMc00258: SMc00258 - signal peptide protein, at 1,826,892 to 1,827,155 SMc00258 SMc00259: SMc00259 - hypothetical protein, at 1,827,172 to 1,828,029 SMc00259 SMc00260: SMc00260 - oxidoreductase, at 1,828,026 to 1,828,790 SMc00260 SMc00261: SMc00261 - acyl-CoA synthetase, at 1,828,787 to 1,830,436 SMc00261 Position (kb) 1828 1829Strain fitness (log2 ratio) -2 -1 0 1 2at 1827.079 kb on + strand, within SMc00258at 1827.224 kb on + strandat 1827.229 kb on + strandat 1827.229 kb on + strandat 1827.230 kb on - strandat 1827.230 kb on - strandat 1827.230 kb on - strandat 1827.244 kb on + strandat 1827.244 kb on + strandat 1827.244 kb on + strandat 1827.244 kb on + strandat 1827.245 kb on - strandat 1827.330 kb on + strand, within SMc00259at 1827.330 kb on + strand, within SMc00259at 1827.650 kb on - strand, within SMc00259at 1827.650 kb on - strand, within SMc00259at 1827.778 kb on + strand, within SMc00259at 1827.778 kb on + strand, within SMc00259at 1827.778 kb on + strand, within SMc00259at 1827.778 kb on + strand, within SMc00259at 1827.778 kb on + strand, within SMc00259at 1827.778 kb on + strand, within SMc00259at 1827.778 kb on + strand, within SMc00259at 1827.778 kb on + strand, within SMc00259at 1827.779 kb on - strand, within SMc00259at 1827.779 kb on - strand, within SMc00259at 1827.779 kb on - strand, within SMc00259at 1827.779 kb on - strand, within SMc00259at 1827.779 kb on - strand, within SMc00259at 1827.779 kb on - strand, within SMc00259at 1827.779 kb on - strand, within SMc00259at 1827.779 kb on - strand, within SMc00259at 1827.834 kb on - strand, within SMc00259at 1827.868 kb on + strand, within SMc00259at 1827.868 kb on + strand, within SMc00259at 1827.869 kb on - strand, within SMc00259at 1827.983 kb on - strandat 1828.094 kb on + strandat 1828.094 kb on + strandat 1828.094 kb on + strandat 1828.095 kb on - strandat 1828.096 kb on + strandat 1828.096 kb on + strandat 1828.096 kb on + strandat 1828.096 kb on + strandat 1828.097 kb on - strandat 1828.097 kb on - strandat 1828.206 kb on - strand, within SMc00260at 1828.297 kb on + strand, within SMc00260at 1828.297 kb on + strand, within SMc00260at 1828.297 kb on + strand, within SMc00260at 1828.298 kb on - strand, within SMc00260at 1828.298 kb on - strand, within SMc00260at 1828.333 kb on + strand, within SMc00260at 1828.334 kb on - strand, within SMc00260at 1828.368 kb on + strand, within SMc00260at 1828.941 kb on + strandat 1828.942 kb on - strandat 1828.942 kb on - strandat 1829.077 kb on + strand, within SMc00261at 1829.119 kb on - strand, within SMc00261at 1829.142 kb on + strand, within SMc00261at 1829.142 kb on + strand, within SMc00261at 1829.142 kb on + strand, within SMc00261at 1829.142 kb on + strand, within SMc00261at 1829.142 kb on + strand, within SMc00261at 1829.143 kb on - strand, within SMc00261at 1829.143 kb on - strand, within SMc00261at 1829.143 kb on - strand, within SMc00261at 1829.143 kb on - strand, within SMc00261at 1829.143 kb on - strand, within SMc00261at 1829.143 kb on - strand, within SMc00261at 1829.146 kb on + strand, within SMc00261at 1829.170 kb on - strand, within SMc00261at 1829.259 kb on + strand, within SMc00261at 1829.262 kb on + strandat 1829.377 kb on - strand, within SMc00261at 1829.469 kb on + strand, within SMc00261at 1829.523 kb on + strand, within SMc00261at 1829.523 kb on + strand, within SMc00261at 1829.541 kb on + strand, within SMc00261at 1829.541 kb on + strand, within SMc00261at 1829.541 kb on + strand, within SMc00261at 1829.542 kb on - strand, within SMc00261at 1829.542 kb on - strand, within SMc00261at 1829.550 kb on + strand, within SMc00261at 1829.551 kb on - strand, within SMc00261at 1829.572 kb on - strand, within SMc00261at 1829.606 kb on + strand, within SMc00261at 1829.606 kb on + strand, within SMc00261at 1829.606 kb on + strand, within SMc00261at 1829.607 kb on - strand, within SMc00261at 1829.611 kb on + strand, within SMc00261at 1829.654 kb on + strand, within SMc00261at 1829.655 kb on - strand, within SMc00261

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Per-strain Table

Position Strand Gene LocusTag Fraction Myristic (C)
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1,827,079 + SMc00258 0.71 +0.8
1,827,224 + -0.7
1,827,229 + +0.9
1,827,229 + +0.6
1,827,230 - -0.0
1,827,230 - -0.2
1,827,230 - +0.3
1,827,244 + +0.3
1,827,244 + -0.2
1,827,244 + +1.0
1,827,244 + -0.8
1,827,245 - +1.1
1,827,330 + SMc00259 0.18 +0.2
1,827,330 + SMc00259 0.18 +0.3
1,827,650 - SMc00259 0.56 -0.4
1,827,650 - SMc00259 0.56 -0.0
1,827,778 + SMc00259 0.71 -0.6
1,827,778 + SMc00259 0.71 -0.1
1,827,778 + SMc00259 0.71 -0.4
1,827,778 + SMc00259 0.71 -0.8
1,827,778 + SMc00259 0.71 +0.0
1,827,778 + SMc00259 0.71 -0.5
1,827,778 + SMc00259 0.71 +2.2
1,827,778 + SMc00259 0.71 -0.1
1,827,779 - SMc00259 0.71 +0.3
1,827,779 - SMc00259 0.71 +1.2
1,827,779 - SMc00259 0.71 -1.2
1,827,779 - SMc00259 0.71 -0.1
1,827,779 - SMc00259 0.71 +0.3
1,827,779 - SMc00259 0.71 -1.0
1,827,779 - SMc00259 0.71 -0.2
1,827,779 - SMc00259 0.71 +0.0
1,827,834 - SMc00259 0.77 +0.3
1,827,868 + SMc00259 0.81 -1.0
1,827,868 + SMc00259 0.81 +0.3
1,827,869 - SMc00259 0.81 +0.6
1,827,983 - +1.0
1,828,094 + -0.2
1,828,094 + -0.1
1,828,094 + +0.4
1,828,095 - -0.3
1,828,096 + -1.3
1,828,096 + -0.9
1,828,096 + +0.7
1,828,096 + -0.1
1,828,097 - -1.2
1,828,097 - -0.4
1,828,206 - SMc00260 0.24 +0.8
1,828,297 + SMc00260 0.35 -0.1
1,828,297 + SMc00260 0.35 -1.2
1,828,297 + SMc00260 0.35 -0.6
1,828,298 - SMc00260 0.36 -0.2
1,828,298 - SMc00260 0.36 +0.2
1,828,333 + SMc00260 0.40 -0.3
1,828,334 - SMc00260 0.40 -0.2
1,828,368 + SMc00260 0.45 -0.1
1,828,941 + +0.1
1,828,942 - +1.2
1,828,942 - -1.9
1,829,077 + SMc00261 0.18 +0.3
1,829,119 - SMc00261 0.20 +0.1
1,829,142 + SMc00261 0.22 -0.1
1,829,142 + SMc00261 0.22 +0.1
1,829,142 + SMc00261 0.22 -0.3
1,829,142 + SMc00261 0.22 +0.5
1,829,142 + SMc00261 0.22 +0.8
1,829,143 - SMc00261 0.22 -0.8
1,829,143 - SMc00261 0.22 -1.3
1,829,143 - SMc00261 0.22 -0.5
1,829,143 - SMc00261 0.22 -0.9
1,829,143 - SMc00261 0.22 +0.1
1,829,143 - SMc00261 0.22 -0.7
1,829,146 + SMc00261 0.22 -0.1
1,829,170 - SMc00261 0.23 -1.5
1,829,259 + SMc00261 0.29 -0.7
1,829,262 + +0.6
1,829,377 - SMc00261 0.36 +0.3
1,829,469 + SMc00261 0.41 -0.6
1,829,523 + SMc00261 0.45 +0.7
1,829,523 + SMc00261 0.45 -0.5
1,829,541 + SMc00261 0.46 -0.4
1,829,541 + SMc00261 0.46 +0.2
1,829,541 + SMc00261 0.46 +2.4
1,829,542 - SMc00261 0.46 -0.7
1,829,542 - SMc00261 0.46 +0.0
1,829,550 + SMc00261 0.46 -0.5
1,829,551 - SMc00261 0.46 +0.2
1,829,572 - SMc00261 0.48 -1.4
1,829,606 + SMc00261 0.50 +0.1
1,829,606 + SMc00261 0.50 -0.1
1,829,606 + SMc00261 0.50 -0.1
1,829,607 - SMc00261 0.50 -1.2
1,829,611 + SMc00261 0.50 -0.2
1,829,654 + SMc00261 0.53 +1.5
1,829,655 - SMc00261 0.53 -0.8

Or see this region's nucleotide sequence