Strain Fitness in Sinorhizobium meliloti 1021 around SMa2165

Experiment: Myristic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMa2163 and SMa2165 are separated by 125 nucleotides SMa2163: SMa2163 - AraC family transcriptional regulator, at 1,218,608 to 1,219,489 SMa2163 SMa2165: SMa2165 - short chain, at 1,219,615 to 1,220,355 SMa2165 Position (kb) 1219 1220 1221Strain fitness (log2 ratio) -2 -1 0 1at 1218.667 kb on + strandat 1218.668 kb on - strandat 1218.716 kb on - strand, within SMa2163at 1218.761 kb on - strand, within SMa2163at 1218.771 kb on + strand, within SMa2163at 1218.771 kb on + strand, within SMa2163at 1218.822 kb on - strand, within SMa2163at 1218.822 kb on - strand, within SMa2163at 1219.051 kb on + strand, within SMa2163at 1219.052 kb on - strand, within SMa2163at 1219.052 kb on - strand, within SMa2163at 1219.052 kb on - strand, within SMa2163at 1219.056 kb on - strand, within SMa2163at 1219.056 kb on - strand, within SMa2163at 1219.088 kb on + strand, within SMa2163at 1219.089 kb on - strand, within SMa2163at 1219.140 kb on - strand, within SMa2163at 1219.173 kb on - strand, within SMa2163at 1219.173 kb on - strand, within SMa2163at 1219.173 kb on - strand, within SMa2163at 1219.221 kb on + strand, within SMa2163at 1219.221 kb on + strand, within SMa2163at 1219.237 kb on + strand, within SMa2163at 1219.238 kb on - strand, within SMa2163at 1219.853 kb on + strand, within SMa2165at 1219.957 kb on - strand, within SMa2165at 1219.957 kb on - strand, within SMa2165at 1219.985 kb on + strand, within SMa2165at 1219.985 kb on + strand, within SMa2165at 1219.989 kb on - strand, within SMa2165at 1219.989 kb on - strand, within SMa2165at 1220.032 kb on + strand, within SMa2165at 1220.033 kb on - strand, within SMa2165at 1220.033 kb on - strand, within SMa2165at 1220.033 kb on - strand, within SMa2165at 1220.219 kb on + strand, within SMa2165at 1220.219 kb on + strand, within SMa2165at 1220.220 kb on - strand, within SMa2165at 1220.323 kb on + strandat 1220.323 kb on + strandat 1220.324 kb on - strandat 1220.543 kb on - strandat 1220.572 kb on - strandat 1220.651 kb on - strandat 1220.662 kb on + strandat 1220.663 kb on - strandat 1220.682 kb on - strandat 1220.682 kb on - strandat 1220.706 kb on + strandat 1220.763 kb on + strandat 1220.808 kb on + strandat 1220.867 kb on + strandat 1220.961 kb on + strandat 1220.962 kb on - strandat 1220.962 kb on - strandat 1220.962 kb on - strandat 1220.962 kb on - strandat 1221.090 kb on + strandat 1221.091 kb on - strandat 1221.155 kb on + strandat 1221.155 kb on + strandat 1221.155 kb on + strandat 1221.163 kb on + strandat 1221.164 kb on - strandat 1221.237 kb on + strandat 1221.296 kb on - strandat 1221.300 kb on + strandat 1221.300 kb on + strandat 1221.321 kb on + strandat 1221.321 kb on + strandat 1221.322 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Myristic (C)
remove
1,218,667 + +0.2
1,218,668 - +0.5
1,218,716 - SMa2163 0.12 -0.1
1,218,761 - SMa2163 0.17 +0.1
1,218,771 + SMa2163 0.18 -0.3
1,218,771 + SMa2163 0.18 +1.1
1,218,822 - SMa2163 0.24 -1.8
1,218,822 - SMa2163 0.24 -0.3
1,219,051 + SMa2163 0.50 +0.2
1,219,052 - SMa2163 0.50 -0.4
1,219,052 - SMa2163 0.50 -1.0
1,219,052 - SMa2163 0.50 -0.7
1,219,056 - SMa2163 0.51 -1.3
1,219,056 - SMa2163 0.51 +0.2
1,219,088 + SMa2163 0.54 +0.5
1,219,089 - SMa2163 0.55 -1.0
1,219,140 - SMa2163 0.60 +0.3
1,219,173 - SMa2163 0.64 +0.2
1,219,173 - SMa2163 0.64 -0.4
1,219,173 - SMa2163 0.64 +1.0
1,219,221 + SMa2163 0.70 +0.8
1,219,221 + SMa2163 0.70 +0.2
1,219,237 + SMa2163 0.71 -1.8
1,219,238 - SMa2163 0.71 +1.3
1,219,853 + SMa2165 0.32 +0.1
1,219,957 - SMa2165 0.46 +0.8
1,219,957 - SMa2165 0.46 -0.1
1,219,985 + SMa2165 0.50 +0.8
1,219,985 + SMa2165 0.50 -0.3
1,219,989 - SMa2165 0.50 -0.1
1,219,989 - SMa2165 0.50 +0.0
1,220,032 + SMa2165 0.56 +0.2
1,220,033 - SMa2165 0.56 -0.0
1,220,033 - SMa2165 0.56 -0.5
1,220,033 - SMa2165 0.56 -0.3
1,220,219 + SMa2165 0.82 +0.5
1,220,219 + SMa2165 0.82 -0.6
1,220,220 - SMa2165 0.82 +0.4
1,220,323 + -0.2
1,220,323 + -0.3
1,220,324 - +0.2
1,220,543 - +0.2
1,220,572 - -0.3
1,220,651 - +0.3
1,220,662 + +0.8
1,220,663 - +0.0
1,220,682 - +0.1
1,220,682 - -1.1
1,220,706 + -0.5
1,220,763 + +0.8
1,220,808 + +0.6
1,220,867 + +0.8
1,220,961 + +0.9
1,220,962 - -0.7
1,220,962 - -0.1
1,220,962 - -0.3
1,220,962 - -0.7
1,221,090 + -0.2
1,221,091 - +0.1
1,221,155 + +0.1
1,221,155 + -0.4
1,221,155 + -0.3
1,221,163 + -0.6
1,221,164 - -0.3
1,221,237 + -0.2
1,221,296 - +0.5
1,221,300 + -0.0
1,221,300 + -0.3
1,221,321 + +0.0
1,221,321 + -0.0
1,221,322 - -0.2

Or see this region's nucleotide sequence