Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21571

Experiment: Myristic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21570 and SM_b21571 are separated by 141 nucleotidesSM_b21571 and SM_b21572 are separated by 97 nucleotides SM_b21570: SM_b21570 - NADH-dependent oxidase, at 1,108,027 to 1,110,063 _b21570 SM_b21571: SM_b21571 - TetR family transcriptional regulator, at 1,110,205 to 1,110,831 _b21571 SM_b21572: SM_b21572 - amino acid uptake ABC transporter substrate-binding protein precursor, at 1,110,929 to 1,111,930 _b21572 Position (kb) 1110 1111Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1109.207 kb on - strand, within SM_b21570at 1109.254 kb on - strand, within SM_b21570at 1109.260 kb on + strand, within SM_b21570at 1109.260 kb on + strand, within SM_b21570at 1109.260 kb on + strand, within SM_b21570at 1109.261 kb on - strand, within SM_b21570at 1109.312 kb on + strand, within SM_b21570at 1109.313 kb on - strand, within SM_b21570at 1109.313 kb on - strand, within SM_b21570at 1109.556 kb on - strand, within SM_b21570at 1109.835 kb on - strand, within SM_b21570at 1109.835 kb on - strand, within SM_b21570at 1109.934 kb on + strandat 1110.035 kb on + strandat 1110.036 kb on - strandat 1110.096 kb on + strandat 1110.096 kb on + strandat 1110.097 kb on - strandat 1110.097 kb on - strandat 1110.200 kb on + strandat 1110.268 kb on + strand, within SM_b21571at 1110.353 kb on - strand, within SM_b21571at 1110.431 kb on + strand, within SM_b21571at 1110.448 kb on + strand, within SM_b21571at 1110.449 kb on - strand, within SM_b21571at 1110.449 kb on - strand, within SM_b21571at 1110.449 kb on - strand, within SM_b21571at 1110.660 kb on - strand, within SM_b21571at 1110.660 kb on - strand, within SM_b21571at 1110.660 kb on - strand, within SM_b21571at 1110.660 kb on - strand, within SM_b21571at 1110.676 kb on + strand, within SM_b21571at 1110.677 kb on - strand, within SM_b21571at 1110.694 kb on + strand, within SM_b21571at 1110.695 kb on - strand, within SM_b21571at 1110.696 kb on + strand, within SM_b21571at 1110.722 kb on + strand, within SM_b21571at 1110.722 kb on + strand, within SM_b21571at 1110.722 kb on + strand, within SM_b21571at 1110.723 kb on - strand, within SM_b21571at 1110.829 kb on + strandat 1110.830 kb on - strandat 1110.871 kb on + strandat 1110.873 kb on + strandat 1110.874 kb on - strandat 1110.874 kb on - strandat 1110.927 kb on + strandat 1110.927 kb on + strandat 1110.928 kb on - strandat 1110.928 kb on - strandat 1111.231 kb on + strand, within SM_b21572at 1111.232 kb on - strand, within SM_b21572at 1111.232 kb on - strand, within SM_b21572at 1111.232 kb on - strand, within SM_b21572at 1111.232 kb on - strand, within SM_b21572at 1111.232 kb on - strand, within SM_b21572at 1111.441 kb on + strand, within SM_b21572at 1111.526 kb on + strand, within SM_b21572at 1111.526 kb on + strand, within SM_b21572at 1111.527 kb on - strand, within SM_b21572at 1111.527 kb on - strand, within SM_b21572at 1111.549 kb on + strand, within SM_b21572at 1111.549 kb on + strand, within SM_b21572at 1111.549 kb on + strand, within SM_b21572at 1111.549 kb on + strand, within SM_b21572at 1111.550 kb on - strand, within SM_b21572at 1111.550 kb on - strand, within SM_b21572at 1111.550 kb on - strand, within SM_b21572at 1111.553 kb on + strand, within SM_b21572at 1111.553 kb on + strand, within SM_b21572at 1111.554 kb on - strand, within SM_b21572at 1111.554 kb on - strand, within SM_b21572at 1111.556 kb on + strand, within SM_b21572at 1111.557 kb on - strand, within SM_b21572at 1111.567 kb on + strand, within SM_b21572at 1111.586 kb on + strand, within SM_b21572at 1111.587 kb on - strand, within SM_b21572at 1111.758 kb on - strand, within SM_b21572at 1111.758 kb on - strand, within SM_b21572

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Per-strain Table

Position Strand Gene LocusTag Fraction Myristic (C)
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1,109,207 - SM_b21570 0.58 +0.1
1,109,254 - SM_b21570 0.60 -1.0
1,109,260 + SM_b21570 0.61 +0.4
1,109,260 + SM_b21570 0.61 -0.6
1,109,260 + SM_b21570 0.61 -0.2
1,109,261 - SM_b21570 0.61 -0.0
1,109,312 + SM_b21570 0.63 +0.1
1,109,313 - SM_b21570 0.63 +1.0
1,109,313 - SM_b21570 0.63 -0.6
1,109,556 - SM_b21570 0.75 -0.3
1,109,835 - SM_b21570 0.89 -0.7
1,109,835 - SM_b21570 0.89 -0.1
1,109,934 + -0.2
1,110,035 + +1.0
1,110,036 - -0.6
1,110,096 + -0.5
1,110,096 + -1.5
1,110,097 - +0.9
1,110,097 - +0.5
1,110,200 + +0.7
1,110,268 + SM_b21571 0.10 -0.2
1,110,353 - SM_b21571 0.24 +0.1
1,110,431 + SM_b21571 0.36 -0.5
1,110,448 + SM_b21571 0.39 -1.4
1,110,449 - SM_b21571 0.39 -3.8
1,110,449 - SM_b21571 0.39 +1.4
1,110,449 - SM_b21571 0.39 -0.6
1,110,660 - SM_b21571 0.73 -0.1
1,110,660 - SM_b21571 0.73 -1.4
1,110,660 - SM_b21571 0.73 -0.4
1,110,660 - SM_b21571 0.73 -0.4
1,110,676 + SM_b21571 0.75 -0.6
1,110,677 - SM_b21571 0.75 -0.9
1,110,694 + SM_b21571 0.78 -0.9
1,110,695 - SM_b21571 0.78 +1.0
1,110,696 + SM_b21571 0.78 -0.1
1,110,722 + SM_b21571 0.82 -0.8
1,110,722 + SM_b21571 0.82 +2.4
1,110,722 + SM_b21571 0.82 -0.4
1,110,723 - SM_b21571 0.83 -0.6
1,110,829 + +0.9
1,110,830 - +1.0
1,110,871 + +0.3
1,110,873 + -0.6
1,110,874 - +0.8
1,110,874 - -0.4
1,110,927 + -0.2
1,110,927 + +0.1
1,110,928 - -0.0
1,110,928 - -0.1
1,111,231 + SM_b21572 0.30 +0.9
1,111,232 - SM_b21572 0.30 +0.6
1,111,232 - SM_b21572 0.30 +0.3
1,111,232 - SM_b21572 0.30 +0.1
1,111,232 - SM_b21572 0.30 +0.0
1,111,232 - SM_b21572 0.30 +0.5
1,111,441 + SM_b21572 0.51 +0.3
1,111,526 + SM_b21572 0.60 +0.9
1,111,526 + SM_b21572 0.60 -0.6
1,111,527 - SM_b21572 0.60 -0.5
1,111,527 - SM_b21572 0.60 -0.4
1,111,549 + SM_b21572 0.62 +0.1
1,111,549 + SM_b21572 0.62 -0.1
1,111,549 + SM_b21572 0.62 -0.1
1,111,549 + SM_b21572 0.62 -0.1
1,111,550 - SM_b21572 0.62 -0.3
1,111,550 - SM_b21572 0.62 -0.0
1,111,550 - SM_b21572 0.62 -1.1
1,111,553 + SM_b21572 0.62 +0.6
1,111,553 + SM_b21572 0.62 -0.4
1,111,554 - SM_b21572 0.62 +0.6
1,111,554 - SM_b21572 0.62 +0.3
1,111,556 + SM_b21572 0.63 -0.5
1,111,557 - SM_b21572 0.63 +0.1
1,111,567 + SM_b21572 0.64 +0.9
1,111,586 + SM_b21572 0.66 -0.6
1,111,587 - SM_b21572 0.66 -0.4
1,111,758 - SM_b21572 0.83 -0.0
1,111,758 - SM_b21572 0.83 -0.1

Or see this region's nucleotide sequence