Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21539

Experiment: Myristic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21538 and SM_b21539 overlap by 4 nucleotidesSM_b21539 and SM_b21671 are separated by 6 nucleotidesSM_b21671 and SM_b21540 are separated by 222 nucleotides SM_b21538: SM_b21538 - phosphonoacetate hydrolase, at 1,067,004 to 1,068,278 _b21538 SM_b21539: SM_b21539 - aldehyde dehydrogenase, at 1,068,275 to 1,069,732 _b21539 SM_b21671: SM_b21671 - hypothetical protein, at 1,069,739 to 1,070,227 _b21671 SM_b21540: SM_b21540 - iron uptake ABC transporter substrate-binding protein precursor, at 1,070,450 to 1,071,472 _b21540 Position (kb) 1068 1069 1070Strain fitness (log2 ratio) -2 -1 0 1 2at 1067.355 kb on + strand, within SM_b21538at 1067.356 kb on - strand, within SM_b21538at 1067.545 kb on - strand, within SM_b21538at 1067.619 kb on + strand, within SM_b21538at 1067.620 kb on - strand, within SM_b21538at 1067.620 kb on - strand, within SM_b21538at 1067.620 kb on - strand, within SM_b21538at 1067.637 kb on + strand, within SM_b21538at 1067.637 kb on + strand, within SM_b21538at 1067.637 kb on + strand, within SM_b21538at 1067.652 kb on + strand, within SM_b21538at 1067.653 kb on - strand, within SM_b21538at 1067.653 kb on - strand, within SM_b21538at 1067.653 kb on - strand, within SM_b21538at 1067.653 kb on - strand, within SM_b21538at 1067.802 kb on + strand, within SM_b21538at 1067.802 kb on + strand, within SM_b21538at 1067.803 kb on - strand, within SM_b21538at 1067.803 kb on - strand, within SM_b21538at 1067.874 kb on + strand, within SM_b21538at 1067.874 kb on + strand, within SM_b21538at 1067.874 kb on + strand, within SM_b21538at 1067.875 kb on - strand, within SM_b21538at 1067.875 kb on - strand, within SM_b21538at 1067.875 kb on - strand, within SM_b21538at 1067.875 kb on - strand, within SM_b21538at 1067.875 kb on - strand, within SM_b21538at 1067.916 kb on + strand, within SM_b21538at 1068.325 kb on - strandat 1068.358 kb on - strandat 1068.452 kb on + strand, within SM_b21539at 1068.453 kb on - strand, within SM_b21539at 1068.584 kb on + strandat 1068.584 kb on + strand, within SM_b21539at 1068.613 kb on + strand, within SM_b21539at 1068.613 kb on + strand, within SM_b21539at 1068.867 kb on - strand, within SM_b21539at 1069.542 kb on - strand, within SM_b21539at 1069.560 kb on - strand, within SM_b21539at 1069.560 kb on - strand, within SM_b21539at 1069.662 kb on - strandat 1069.750 kb on + strandat 1069.753 kb on + strandat 1069.753 kb on + strandat 1069.754 kb on - strandat 1069.754 kb on - strandat 1069.769 kb on + strandat 1069.769 kb on + strandat 1070.008 kb on - strand, within SM_b21671at 1070.023 kb on - strand, within SM_b21671at 1070.094 kb on + strand, within SM_b21671at 1070.216 kb on + strandat 1070.216 kb on + strandat 1070.216 kb on + strandat 1070.216 kb on + strandat 1070.217 kb on - strandat 1070.217 kb on - strandat 1070.217 kb on - strandat 1070.217 kb on - strandat 1070.217 kb on - strandat 1070.217 kb on - strandat 1070.218 kb on + strandat 1070.218 kb on + strandat 1070.219 kb on - strandat 1070.219 kb on - strandat 1070.225 kb on + strandat 1070.234 kb on - strandat 1070.236 kb on + strandat 1070.446 kb on + strandat 1070.447 kb on - strandat 1070.447 kb on - strandat 1070.538 kb on - strandat 1070.538 kb on - strandat 1070.570 kb on + strand, within SM_b21540at 1070.571 kb on - strand, within SM_b21540

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Myristic (C)
remove
1,067,355 + SM_b21538 0.28 -0.0
1,067,356 - SM_b21538 0.28 -0.0
1,067,545 - SM_b21538 0.42 +0.5
1,067,619 + SM_b21538 0.48 +0.2
1,067,620 - SM_b21538 0.48 -0.6
1,067,620 - SM_b21538 0.48 +0.2
1,067,620 - SM_b21538 0.48 -0.4
1,067,637 + SM_b21538 0.50 +0.1
1,067,637 + SM_b21538 0.50 -0.1
1,067,637 + SM_b21538 0.50 -0.6
1,067,652 + SM_b21538 0.51 -0.5
1,067,653 - SM_b21538 0.51 +0.4
1,067,653 - SM_b21538 0.51 -0.5
1,067,653 - SM_b21538 0.51 +0.7
1,067,653 - SM_b21538 0.51 -0.1
1,067,802 + SM_b21538 0.63 -0.6
1,067,802 + SM_b21538 0.63 -0.6
1,067,803 - SM_b21538 0.63 -0.5
1,067,803 - SM_b21538 0.63 -0.3
1,067,874 + SM_b21538 0.68 -0.2
1,067,874 + SM_b21538 0.68 -0.4
1,067,874 + SM_b21538 0.68 +0.6
1,067,875 - SM_b21538 0.68 -0.6
1,067,875 - SM_b21538 0.68 +0.3
1,067,875 - SM_b21538 0.68 +0.4
1,067,875 - SM_b21538 0.68 -1.1
1,067,875 - SM_b21538 0.68 -0.3
1,067,916 + SM_b21538 0.72 -1.4
1,068,325 - +0.2
1,068,358 - +1.0
1,068,452 + SM_b21539 0.12 -0.2
1,068,453 - SM_b21539 0.12 -0.6
1,068,584 + +0.8
1,068,584 + SM_b21539 0.21 -0.5
1,068,613 + SM_b21539 0.23 -0.2
1,068,613 + SM_b21539 0.23 +0.4
1,068,867 - SM_b21539 0.41 -0.1
1,069,542 - SM_b21539 0.87 -1.8
1,069,560 - SM_b21539 0.88 -0.5
1,069,560 - SM_b21539 0.88 -0.7
1,069,662 - +0.7
1,069,750 + +0.7
1,069,753 + +0.1
1,069,753 + +0.0
1,069,754 - +0.3
1,069,754 - +0.2
1,069,769 + -0.3
1,069,769 + +2.2
1,070,008 - SM_b21671 0.55 -0.5
1,070,023 - SM_b21671 0.58 -0.0
1,070,094 + SM_b21671 0.73 -0.1
1,070,216 + -1.4
1,070,216 + +1.0
1,070,216 + -0.9
1,070,216 + -0.3
1,070,217 - +0.0
1,070,217 - +0.2
1,070,217 - -0.1
1,070,217 - -0.8
1,070,217 - +0.9
1,070,217 - -0.5
1,070,218 + +0.7
1,070,218 + -0.3
1,070,219 - +0.1
1,070,219 - -1.1
1,070,225 + +0.2
1,070,234 - +0.2
1,070,236 + +0.7
1,070,446 + -0.1
1,070,447 - -0.0
1,070,447 - +0.2
1,070,538 - +0.1
1,070,538 - +0.8
1,070,570 + SM_b21540 0.12 +0.0
1,070,571 - SM_b21540 0.12 +0.2

Or see this region's nucleotide sequence